Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00830 and CA264_00835 are separated by 205 nucleotides CA264_00835 and CA264_00840 are separated by 84 nucleotides CA264_00840 and CA264_00845 are separated by 86 nucleotides CA264_00845 and CA264_00850 are separated by 171 nucleotides
CA264_00830: CA264_00830 - ribonuclease HI, at 177,621 to 178,091
_00830
CA264_00835: CA264_00835 - hypothetical protein, at 178,297 to 178,857
_00835
CA264_00840: CA264_00840 - phosphoserine aminotransferase, at 178,942 to 180,003
_00840
CA264_00845: CA264_00845 - type II 3-dehydroquinate dehydratase, at 180,090 to 180,536
_00845
CA264_00850: CA264_00850 - site-specific tyrosine recombinase XerD, at 180,708 to 181,607
_00850
Position (kb) 178
179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.081 kb on - strand at 178.081 kb on - strand at 178.123 kb on + strand at 178.161 kb on + strand at 178.162 kb on - strand at 178.170 kb on + strand at 178.170 kb on + strand at 178.170 kb on + strand at 178.170 kb on + strand at 178.171 kb on - strand at 178.177 kb on - strand at 178.198 kb on + strand at 178.199 kb on - strand at 178.215 kb on + strand at 178.259 kb on - strand at 178.291 kb on + strand at 178.301 kb on - strand at 178.414 kb on + strand, within CA264_00835 at 178.418 kb on - strand, within CA264_00835 at 178.425 kb on - strand, within CA264_00835 at 178.454 kb on - strand, within CA264_00835 at 178.456 kb on + strand, within CA264_00835 at 178.457 kb on - strand, within CA264_00835 at 178.457 kb on - strand, within CA264_00835 at 178.475 kb on + strand, within CA264_00835 at 178.623 kb on + strand, within CA264_00835 at 178.623 kb on + strand, within CA264_00835 at 178.800 kb on + strand, within CA264_00835 at 178.847 kb on - strand at 178.883 kb on + strand at 178.883 kb on + strand at 178.929 kb on + strand at 178.929 kb on + strand at 178.930 kb on - strand at 178.930 kb on - strand at 178.932 kb on - strand at 178.938 kb on + strand at 178.938 kb on + strand at 178.939 kb on - strand at 178.939 kb on - strand at 178.939 kb on - strand at 178.939 kb on - strand at 178.940 kb on + strand at 180.004 kb on - strand at 180.004 kb on - strand at 180.029 kb on - strand at 180.064 kb on + strand at 180.064 kb on + strand at 180.067 kb on + strand at 180.067 kb on + strand at 180.067 kb on + strand at 180.068 kb on - strand at 180.068 kb on - strand at 180.092 kb on - strand at 180.548 kb on + strand at 180.565 kb on + strand at 180.565 kb on + strand at 180.574 kb on - strand at 180.585 kb on - strand at 180.617 kb on - strand at 180.628 kb on - strand at 180.641 kb on + strand at 180.646 kb on - strand at 180.647 kb on + strand at 180.647 kb on + strand at 180.651 kb on + strand at 180.675 kb on + strand at 180.676 kb on - strand at 180.682 kb on + strand at 180.683 kb on - strand at 180.726 kb on - strand at 180.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 178,081 - -0.1 178,081 - +0.8 178,123 + -0.1 178,161 + +0.7 178,162 - -1.8 178,170 + -1.5 178,170 + +0.2 178,170 + +0.6 178,170 + -0.5 178,171 - -0.2 178,177 - -0.3 178,198 + +1.3 178,199 - +0.4 178,215 + +0.6 178,259 - -0.7 178,291 + -0.7 178,301 - +0.8 178,414 + CA264_00835 0.21 +0.9 178,418 - CA264_00835 0.22 +2.2 178,425 - CA264_00835 0.23 +0.6 178,454 - CA264_00835 0.28 -0.1 178,456 + CA264_00835 0.28 +0.2 178,457 - CA264_00835 0.29 +0.7 178,457 - CA264_00835 0.29 +0.6 178,475 + CA264_00835 0.32 +0.4 178,623 + CA264_00835 0.58 -0.1 178,623 + CA264_00835 0.58 +0.5 178,800 + CA264_00835 0.90 +1.1 178,847 - -0.4 178,883 + +0.8 178,883 + +0.1 178,929 + +0.5 178,929 + +0.3 178,930 - +0.1 178,930 - -0.8 178,932 - +0.8 178,938 + +1.2 178,938 + +0.1 178,939 - +0.6 178,939 - +0.5 178,939 - +0.8 178,939 - +0.2 178,940 + -0.1 180,004 - +1.1 180,004 - +1.4 180,029 - +0.3 180,064 + +0.3 180,064 + -0.7 180,067 + -1.0 180,067 + -0.6 180,067 + -0.2 180,068 - -0.1 180,068 - +0.5 180,092 - -0.5 180,548 + -0.4 180,565 + -0.0 180,565 + -0.7 180,574 - +1.0 180,585 - -0.2 180,617 - +0.6 180,628 - +0.3 180,641 + -0.5 180,646 - -0.1 180,647 + -0.1 180,647 + +0.1 180,651 + +0.3 180,675 + +0.3 180,676 - +0.2 180,682 + -0.7 180,683 - +0.4 180,726 - -0.1 180,728 - -1.3
Or see this region's nucleotide sequence