Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00005 and CA264_00010 are separated by 90 nucleotides CA264_00010 and CA264_00015 are separated by 410 nucleotides CA264_00015 and CA264_00020 are separated by 535 nucleotides
CA264_00005: CA264_00005 - chromosomal replication initiation protein DnaA, at 1 to 1,425
_00005
CA264_00010: CA264_00010 - hypothetical protein, at 1,516 to 1,944
_00010
CA264_00015: CA264_00015 - hypothetical protein, at 2,355 to 3,854
_00015
CA264_00020: CA264_00020 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 4,390 to 5,541
_00020
Position (kb)
2
3
4 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1.437 kb on - strand at 1.496 kb on + strand at 1.551 kb on - strand at 1.634 kb on + strand, within CA264_00010 at 1.754 kb on + strand, within CA264_00010 at 1.755 kb on - strand, within CA264_00010 at 1.755 kb on - strand, within CA264_00010 at 1.766 kb on - strand, within CA264_00010 at 1.775 kb on + strand, within CA264_00010 at 1.776 kb on - strand, within CA264_00010 at 1.853 kb on + strand, within CA264_00010 at 1.854 kb on - strand, within CA264_00010 at 1.857 kb on - strand, within CA264_00010 at 1.857 kb on - strand, within CA264_00010 at 1.862 kb on + strand, within CA264_00010 at 1.874 kb on + strand, within CA264_00010 at 1.875 kb on - strand, within CA264_00010 at 1.902 kb on + strand at 1.903 kb on - strand at 1.903 kb on - strand at 1.947 kb on + strand at 1.979 kb on - strand at 1.991 kb on - strand at 2.007 kb on + strand at 2.008 kb on - strand at 2.008 kb on - strand at 2.028 kb on + strand at 2.028 kb on + strand at 2.029 kb on - strand at 2.078 kb on + strand at 2.079 kb on - strand at 2.080 kb on + strand at 2.081 kb on - strand at 2.081 kb on - strand at 2.108 kb on + strand at 2.189 kb on + strand at 2.193 kb on + strand at 2.194 kb on - strand at 2.230 kb on - strand at 2.230 kb on - strand at 2.230 kb on - strand at 2.242 kb on + strand at 2.243 kb on - strand at 2.300 kb on - strand at 2.300 kb on - strand at 2.319 kb on - strand at 2.363 kb on - strand at 2.395 kb on - strand at 2.462 kb on + strand at 2.677 kb on - strand, within CA264_00015 at 2.677 kb on - strand, within CA264_00015 at 2.677 kb on - strand, within CA264_00015 at 2.677 kb on - strand, within CA264_00015 at 2.699 kb on + strand, within CA264_00015 at 2.699 kb on + strand, within CA264_00015 at 2.742 kb on + strand, within CA264_00015 at 2.853 kb on - strand, within CA264_00015 at 3.016 kb on - strand, within CA264_00015 at 3.016 kb on - strand, within CA264_00015 at 3.016 kb on - strand, within CA264_00015 at 3.016 kb on - strand, within CA264_00015 at 3.061 kb on + strand, within CA264_00015 at 3.088 kb on - strand, within CA264_00015 at 3.258 kb on - strand, within CA264_00015 at 3.331 kb on - strand, within CA264_00015 at 3.370 kb on - strand, within CA264_00015 at 3.402 kb on - strand, within CA264_00015 at 3.411 kb on + strand, within CA264_00015 at 3.425 kb on - strand, within CA264_00015 at 3.425 kb on - strand, within CA264_00015 at 3.445 kb on - strand, within CA264_00015 at 3.662 kb on + strand, within CA264_00015 at 3.678 kb on + strand, within CA264_00015 at 3.679 kb on - strand, within CA264_00015 at 3.754 kb on - strand at 3.754 kb on - strand at 3.835 kb on + strand at 3.836 kb on - strand at 3.836 kb on - strand at 3.859 kb on + strand at 3.860 kb on - strand at 4.024 kb on - strand at 4.024 kb on - strand at 4.054 kb on - strand at 4.054 kb on - strand at 4.057 kb on + strand at 4.058 kb on - strand at 4.066 kb on - strand at 4.066 kb on - strand at 4.066 kb on - strand at 4.066 kb on - strand at 4.243 kb on + strand at 4.244 kb on - strand at 4.278 kb on - strand at 4.283 kb on - strand at 4.283 kb on - strand at 4.283 kb on - strand at 4.289 kb on - strand at 4.307 kb on - strand at 4.333 kb on + strand at 4.334 kb on - strand at 4.334 kb on - strand at 4.334 kb on - strand at 4.334 kb on - strand at 4.336 kb on - strand at 4.336 kb on - strand at 4.340 kb on + strand at 4.341 kb on - strand at 4.341 kb on - strand at 4.341 kb on - strand at 4.347 kb on - strand at 4.354 kb on + strand at 4.355 kb on - strand at 4.377 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 1,437 - -0.2 1,496 + +0.2 1,551 - -0.4 1,634 + CA264_00010 0.28 +0.1 1,754 + CA264_00010 0.55 +0.6 1,755 - CA264_00010 0.56 +1.1 1,755 - CA264_00010 0.56 -0.0 1,766 - CA264_00010 0.58 -0.1 1,775 + CA264_00010 0.60 +1.2 1,776 - CA264_00010 0.61 -0.7 1,853 + CA264_00010 0.79 -0.8 1,854 - CA264_00010 0.79 +0.5 1,857 - CA264_00010 0.79 -0.3 1,857 - CA264_00010 0.79 +0.3 1,862 + CA264_00010 0.81 +0.4 1,874 + CA264_00010 0.83 +0.0 1,875 - CA264_00010 0.84 +0.3 1,902 + +0.8 1,903 - -2.3 1,903 - +0.1 1,947 + -0.4 1,979 - +0.1 1,991 - -0.1 2,007 + -0.2 2,008 - +1.2 2,008 - +0.1 2,028 + +0.0 2,028 + +0.3 2,029 - +0.2 2,078 + +1.2 2,079 - +0.3 2,080 + +0.6 2,081 - +0.1 2,081 - +0.4 2,108 + +0.7 2,189 + +0.4 2,193 + +0.4 2,194 - -0.2 2,230 - +0.6 2,230 - +0.2 2,230 - +0.1 2,242 + -0.1 2,243 - +1.1 2,300 - +0.5 2,300 - -0.8 2,319 - +0.3 2,363 - -0.8 2,395 - -0.9 2,462 + +1.1 2,677 - CA264_00015 0.21 +0.3 2,677 - CA264_00015 0.21 -0.4 2,677 - CA264_00015 0.21 +0.6 2,677 - CA264_00015 0.21 -0.8 2,699 + CA264_00015 0.23 -0.6 2,699 + CA264_00015 0.23 +1.3 2,742 + CA264_00015 0.26 +0.6 2,853 - CA264_00015 0.33 -0.2 3,016 - CA264_00015 0.44 -0.6 3,016 - CA264_00015 0.44 -0.9 3,016 - CA264_00015 0.44 +0.8 3,016 - CA264_00015 0.44 -0.7 3,061 + CA264_00015 0.47 +0.4 3,088 - CA264_00015 0.49 -0.5 3,258 - CA264_00015 0.60 -0.1 3,331 - CA264_00015 0.65 +0.3 3,370 - CA264_00015 0.68 +0.1 3,402 - CA264_00015 0.70 +0.2 3,411 + CA264_00015 0.70 -1.3 3,425 - CA264_00015 0.71 -0.4 3,425 - CA264_00015 0.71 +0.3 3,445 - CA264_00015 0.73 -0.3 3,662 + CA264_00015 0.87 -0.0 3,678 + CA264_00015 0.88 +0.5 3,679 - CA264_00015 0.88 -3.0 3,754 - +0.4 3,754 - +0.1 3,835 + -0.5 3,836 - +0.3 3,836 - +0.8 3,859 + +0.2 3,860 - -0.4 4,024 - +0.9 4,024 - +0.8 4,054 - -0.0 4,054 - +1.0 4,057 + +0.0 4,058 - +0.5 4,066 - +0.5 4,066 - -0.4 4,066 - +2.3 4,066 - +0.3 4,243 + +0.4 4,244 - +0.1 4,278 - +0.1 4,283 - -1.4 4,283 - +0.5 4,283 - +0.1 4,289 - -0.0 4,307 - +1.1 4,333 + +1.0 4,334 - +0.6 4,334 - -0.0 4,334 - +0.8 4,334 - +0.8 4,336 - -0.0 4,336 - +0.1 4,340 + +1.1 4,341 - +0.7 4,341 - -0.4 4,341 - -0.3 4,347 - -0.2 4,354 + +0.4 4,355 - -0.0 4,377 + +0.2
Or see this region's nucleotide sequence