Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_919

Experiment: Fusidic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_918 and PfGW456L13_919 are separated by 89 nucleotidesPfGW456L13_919 and PfGW456L13_920 are separated by 25 nucleotides PfGW456L13_918 - FMN reductase (EC 1.5.1.29), at 1,029,488 to 1,030,030 _918 PfGW456L13_919 - Alkanesulfonates-binding protein, at 1,030,120 to 1,031,085 _919 PfGW456L13_920 - Alkanesulfonate monooxygenase (EC 1.14.14.5), at 1,031,111 to 1,032,259 _920 Position (kb) 1030 1031 1032Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1029.173 kb on - strandat 1029.234 kb on + strandat 1029.234 kb on + strandat 1029.370 kb on + strandat 1029.370 kb on + strandat 1029.371 kb on - strandat 1029.371 kb on - strandat 1029.516 kb on + strandat 1029.545 kb on + strand, within PfGW456L13_918at 1029.546 kb on - strand, within PfGW456L13_918at 1029.665 kb on + strand, within PfGW456L13_918at 1029.665 kb on + strand, within PfGW456L13_918at 1029.665 kb on + strand, within PfGW456L13_918at 1029.666 kb on - strand, within PfGW456L13_918at 1029.666 kb on - strand, within PfGW456L13_918at 1030.028 kb on + strandat 1030.028 kb on + strandat 1030.028 kb on + strandat 1030.028 kb on + strandat 1030.028 kb on + strandat 1030.029 kb on - strandat 1030.029 kb on - strandat 1030.029 kb on - strandat 1030.029 kb on - strandat 1030.029 kb on - strandat 1030.029 kb on - strandat 1030.029 kb on - strandat 1030.029 kb on - strandat 1030.029 kb on - strandat 1030.029 kb on - strandat 1030.029 kb on - strandat 1030.050 kb on + strandat 1030.050 kb on + strandat 1030.050 kb on + strandat 1030.050 kb on + strandat 1030.050 kb on + strandat 1030.051 kb on - strandat 1030.212 kb on - strandat 1030.231 kb on + strand, within PfGW456L13_919at 1030.232 kb on - strand, within PfGW456L13_919at 1030.232 kb on - strand, within PfGW456L13_919at 1030.426 kb on + strand, within PfGW456L13_919at 1030.426 kb on + strand, within PfGW456L13_919at 1030.426 kb on + strand, within PfGW456L13_919at 1030.427 kb on - strand, within PfGW456L13_919at 1030.427 kb on - strand, within PfGW456L13_919at 1030.427 kb on - strand, within PfGW456L13_919at 1030.427 kb on - strand, within PfGW456L13_919at 1030.435 kb on + strand, within PfGW456L13_919at 1030.436 kb on - strand, within PfGW456L13_919at 1030.552 kb on + strand, within PfGW456L13_919at 1030.552 kb on + strand, within PfGW456L13_919at 1030.553 kb on - strand, within PfGW456L13_919at 1030.553 kb on - strand, within PfGW456L13_919at 1030.591 kb on + strand, within PfGW456L13_919at 1030.591 kb on + strand, within PfGW456L13_919at 1030.591 kb on + strand, within PfGW456L13_919at 1030.592 kb on - strand, within PfGW456L13_919at 1030.592 kb on - strand, within PfGW456L13_919at 1030.592 kb on - strand, within PfGW456L13_919at 1030.592 kb on - strand, within PfGW456L13_919at 1030.592 kb on - strand, within PfGW456L13_919at 1030.592 kb on - strand, within PfGW456L13_919at 1030.592 kb on - strand, within PfGW456L13_919at 1030.611 kb on - strand, within PfGW456L13_919at 1030.611 kb on - strand, within PfGW456L13_919at 1030.762 kb on + strand, within PfGW456L13_919at 1030.780 kb on + strand, within PfGW456L13_919at 1030.780 kb on + strand, within PfGW456L13_919at 1030.781 kb on - strand, within PfGW456L13_919at 1030.781 kb on - strand, within PfGW456L13_919at 1030.940 kb on - strand, within PfGW456L13_919at 1031.002 kb on + strandat 1031.002 kb on + strandat 1031.003 kb on - strandat 1031.003 kb on - strandat 1031.084 kb on - strandat 1031.084 kb on - strandat 1031.140 kb on + strandat 1031.159 kb on + strandat 1031.160 kb on - strandat 1031.202 kb on - strandat 1031.496 kb on - strand, within PfGW456L13_920at 1031.595 kb on + strand, within PfGW456L13_920at 1031.595 kb on + strand, within PfGW456L13_920at 1031.595 kb on + strand, within PfGW456L13_920at 1031.595 kb on + strand, within PfGW456L13_920at 1031.595 kb on + strand, within PfGW456L13_920at 1031.595 kb on + strand, within PfGW456L13_920at 1031.596 kb on - strand, within PfGW456L13_920at 1031.596 kb on - strand, within PfGW456L13_920at 1031.596 kb on - strand, within PfGW456L13_920at 1031.596 kb on - strand, within PfGW456L13_920at 1031.596 kb on - strand, within PfGW456L13_920at 1031.596 kb on - strand, within PfGW456L13_920at 1031.596 kb on - strand, within PfGW456L13_920at 1031.634 kb on - strand, within PfGW456L13_920at 1031.634 kb on - strand, within PfGW456L13_920at 1032.075 kb on + strand, within PfGW456L13_920at 1032.076 kb on - strand, within PfGW456L13_920at 1032.076 kb on - strand, within PfGW456L13_920at 1032.085 kb on + strand, within PfGW456L13_920at 1032.085 kb on + strand, within PfGW456L13_920

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.03 mg/ml
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1,029,173 - -0.9
1,029,234 + +0.7
1,029,234 + +1.2
1,029,370 + -0.3
1,029,370 + -0.9
1,029,371 - +0.0
1,029,371 - -0.5
1,029,516 + -0.5
1,029,545 + PfGW456L13_918 0.10 +0.9
1,029,546 - PfGW456L13_918 0.11 -0.8
1,029,665 + PfGW456L13_918 0.33 -0.3
1,029,665 + PfGW456L13_918 0.33 -1.1
1,029,665 + PfGW456L13_918 0.33 -0.6
1,029,666 - PfGW456L13_918 0.33 -0.1
1,029,666 - PfGW456L13_918 0.33 +1.0
1,030,028 + -0.7
1,030,028 + +0.5
1,030,028 + +0.0
1,030,028 + +0.6
1,030,028 + +3.0
1,030,029 - +2.0
1,030,029 - -0.1
1,030,029 - +0.5
1,030,029 - +0.0
1,030,029 - +0.4
1,030,029 - +1.2
1,030,029 - +0.7
1,030,029 - -0.3
1,030,029 - -0.9
1,030,029 - -0.8
1,030,029 - -0.2
1,030,050 + -0.6
1,030,050 + +0.4
1,030,050 + -0.4
1,030,050 + +0.8
1,030,050 + +1.4
1,030,051 - -2.9
1,030,212 - +0.6
1,030,231 + PfGW456L13_919 0.11 +0.6
1,030,232 - PfGW456L13_919 0.12 -0.5
1,030,232 - PfGW456L13_919 0.12 -1.8
1,030,426 + PfGW456L13_919 0.32 +0.7
1,030,426 + PfGW456L13_919 0.32 -0.4
1,030,426 + PfGW456L13_919 0.32 -2.1
1,030,427 - PfGW456L13_919 0.32 -1.1
1,030,427 - PfGW456L13_919 0.32 -0.9
1,030,427 - PfGW456L13_919 0.32 +0.7
1,030,427 - PfGW456L13_919 0.32 -0.6
1,030,435 + PfGW456L13_919 0.33 -0.1
1,030,436 - PfGW456L13_919 0.33 +1.2
1,030,552 + PfGW456L13_919 0.45 +0.5
1,030,552 + PfGW456L13_919 0.45 -0.4
1,030,553 - PfGW456L13_919 0.45 +0.0
1,030,553 - PfGW456L13_919 0.45 +1.1
1,030,591 + PfGW456L13_919 0.49 +0.2
1,030,591 + PfGW456L13_919 0.49 -2.2
1,030,591 + PfGW456L13_919 0.49 -1.3
1,030,592 - PfGW456L13_919 0.49 +0.6
1,030,592 - PfGW456L13_919 0.49 -0.6
1,030,592 - PfGW456L13_919 0.49 -0.6
1,030,592 - PfGW456L13_919 0.49 +0.2
1,030,592 - PfGW456L13_919 0.49 +0.4
1,030,592 - PfGW456L13_919 0.49 +1.6
1,030,592 - PfGW456L13_919 0.49 -0.0
1,030,611 - PfGW456L13_919 0.51 +0.6
1,030,611 - PfGW456L13_919 0.51 -0.9
1,030,762 + PfGW456L13_919 0.66 +0.0
1,030,780 + PfGW456L13_919 0.68 +0.8
1,030,780 + PfGW456L13_919 0.68 +0.7
1,030,781 - PfGW456L13_919 0.68 +1.0
1,030,781 - PfGW456L13_919 0.68 -0.0
1,030,940 - PfGW456L13_919 0.85 -0.3
1,031,002 + +0.2
1,031,002 + +0.5
1,031,003 - -0.7
1,031,003 - -0.6
1,031,084 - -0.9
1,031,084 - +0.1
1,031,140 + +0.0
1,031,159 + -0.0
1,031,160 - +1.7
1,031,202 - +0.2
1,031,496 - PfGW456L13_920 0.34 +0.8
1,031,595 + PfGW456L13_920 0.42 +1.0
1,031,595 + PfGW456L13_920 0.42 -0.0
1,031,595 + PfGW456L13_920 0.42 -0.9
1,031,595 + PfGW456L13_920 0.42 -0.2
1,031,595 + PfGW456L13_920 0.42 +0.4
1,031,595 + PfGW456L13_920 0.42 -0.1
1,031,596 - PfGW456L13_920 0.42 +0.3
1,031,596 - PfGW456L13_920 0.42 +0.4
1,031,596 - PfGW456L13_920 0.42 +0.6
1,031,596 - PfGW456L13_920 0.42 -0.6
1,031,596 - PfGW456L13_920 0.42 -0.1
1,031,596 - PfGW456L13_920 0.42 -0.0
1,031,596 - PfGW456L13_920 0.42 -0.5
1,031,634 - PfGW456L13_920 0.46 -0.3
1,031,634 - PfGW456L13_920 0.46 +0.6
1,032,075 + PfGW456L13_920 0.84 +0.6
1,032,076 - PfGW456L13_920 0.84 +0.8
1,032,076 - PfGW456L13_920 0.84 +0.4
1,032,085 + PfGW456L13_920 0.85 -0.0
1,032,085 + PfGW456L13_920 0.85 +0.7

Or see this region's nucleotide sequence