Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_656

Experiment: Fusidic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_653 and PfGW456L13_654 are separated by 158 nucleotidesPfGW456L13_654 and PfGW456L13_655 are separated by 0 nucleotidesPfGW456L13_655 and PfGW456L13_656 are separated by 159 nucleotidesPfGW456L13_656 and PfGW456L13_657 are separated by 40 nucleotidesPfGW456L13_657 and PfGW456L13_658 are separated by 81 nucleotides PfGW456L13_653 - Trk system potassium uptake protein TrkA, at 743,740 to 745,116 _653 PfGW456L13_654 - Chaperone protein YscY (Yop proteins translocation protein Y), at 745,275 to 745,589 _654 PfGW456L13_655 - FIG00954045: hypothetical protein, at 745,590 to 745,829 _655 PfGW456L13_656 - Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-), at 745,989 to 746,876 _656 PfGW456L13_657 - DNA-3-methyladenine glycosylase (EC 3.2.2.20), at 746,917 to 747,474 _657 PfGW456L13_658 - Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14), at 747,556 to 748,509 _658 Position (kb) 745 746 747Strain fitness (log2 ratio) -3 -2 -1 0 1at 745.068 kb on + strandat 745.068 kb on + strandat 745.080 kb on - strandat 745.080 kb on - strandat 745.080 kb on - strandat 745.080 kb on - strandat 745.080 kb on - strandat 745.132 kb on + strandat 745.135 kb on + strandat 745.170 kb on + strandat 745.170 kb on + strandat 745.230 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.350 kb on + strand, within PfGW456L13_654at 745.351 kb on - strand, within PfGW456L13_654at 745.351 kb on - strand, within PfGW456L13_654at 745.419 kb on + strand, within PfGW456L13_654at 745.420 kb on - strand, within PfGW456L13_654at 745.438 kb on + strand, within PfGW456L13_654at 745.597 kb on + strandat 745.598 kb on - strandat 745.665 kb on + strand, within PfGW456L13_655at 745.665 kb on + strand, within PfGW456L13_655at 745.666 kb on - strand, within PfGW456L13_655at 745.666 kb on - strand, within PfGW456L13_655at 745.666 kb on - strand, within PfGW456L13_655at 745.685 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.859 kb on + strandat 745.859 kb on + strandat 745.860 kb on - strandat 745.993 kb on + strandat 746.047 kb on + strandat 746.047 kb on + strandat 746.048 kb on - strandat 746.048 kb on - strandat 746.072 kb on - strandat 746.125 kb on + strand, within PfGW456L13_656at 746.125 kb on + strand, within PfGW456L13_656at 746.125 kb on + strand, within PfGW456L13_656at 746.126 kb on - strand, within PfGW456L13_656at 746.126 kb on - strand, within PfGW456L13_656at 746.486 kb on - strand, within PfGW456L13_656at 746.486 kb on - strand, within PfGW456L13_656at 746.774 kb on + strand, within PfGW456L13_656at 746.774 kb on + strand, within PfGW456L13_656at 746.775 kb on - strand, within PfGW456L13_656at 746.919 kb on - strandat 747.428 kb on + strandat 747.428 kb on + strandat 747.429 kb on - strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.03 mg/ml
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745,068 + +0.9
745,068 + +0.1
745,080 - +0.7
745,080 - +0.8
745,080 - -0.9
745,080 - -0.2
745,080 - +0.1
745,132 + -0.1
745,135 + -0.1
745,170 + +0.3
745,170 + -0.8
745,230 + +0.6
745,235 + +0.3
745,235 + -0.2
745,235 + -0.4
745,235 + -0.6
745,235 + +0.2
745,235 + +0.3
745,236 - +1.4
745,236 - +0.4
745,236 - +0.3
745,236 - -0.6
745,236 - -0.3
745,236 - +0.7
745,350 + PfGW456L13_654 0.24 +0.3
745,351 - PfGW456L13_654 0.24 +0.2
745,351 - PfGW456L13_654 0.24 -0.2
745,419 + PfGW456L13_654 0.46 -1.4
745,420 - PfGW456L13_654 0.46 +0.4
745,438 + PfGW456L13_654 0.52 -0.4
745,597 + +1.7
745,598 - +0.3
745,665 + PfGW456L13_655 0.31 -0.4
745,665 + PfGW456L13_655 0.31 -0.2
745,666 - PfGW456L13_655 0.32 +0.1
745,666 - PfGW456L13_655 0.32 -0.6
745,666 - PfGW456L13_655 0.32 -0.2
745,685 - PfGW456L13_655 0.40 -0.6
745,733 - PfGW456L13_655 0.60 +0.1
745,733 - PfGW456L13_655 0.60 -1.4
745,733 - PfGW456L13_655 0.60 +0.3
745,733 - PfGW456L13_655 0.60 -1.3
745,733 - PfGW456L13_655 0.60 +0.6
745,859 + -0.0
745,859 + +1.1
745,860 - +0.2
745,993 + -2.9
746,047 + -1.6
746,047 + -2.3
746,048 - -2.1
746,048 - -2.6
746,072 - -0.9
746,125 + PfGW456L13_656 0.15 -0.1
746,125 + PfGW456L13_656 0.15 -1.9
746,125 + PfGW456L13_656 0.15 +0.4
746,126 - PfGW456L13_656 0.15 -1.6
746,126 - PfGW456L13_656 0.15 -2.9
746,486 - PfGW456L13_656 0.56 -1.1
746,486 - PfGW456L13_656 0.56 -1.1
746,774 + PfGW456L13_656 0.88 +0.4
746,774 + PfGW456L13_656 0.88 -1.7
746,775 - PfGW456L13_656 0.89 -1.1
746,919 - +0.5
747,428 + +0.7
747,428 + -0.0
747,429 - -0.4
747,437 + -1.9
747,437 + -1.8
747,437 + -1.3
747,437 + +0.7
747,437 + +0.4
747,437 + +0.3
747,437 + +0.2
747,437 + +0.3
747,437 + -1.7
747,437 + +0.2
747,475 - +0.1

Or see this region's nucleotide sequence