Experiment: Fusidic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_556 and PfGW456L13_557 are separated by 11 nucleotides PfGW456L13_557 and PfGW456L13_558 overlap by 4 nucleotides PfGW456L13_558 and PfGW456L13_559 are separated by 213 nucleotides
PfGW456L13_556 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 653,684 to 654,805
_556
PfGW456L13_557 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 654,817 to 655,170
_557
PfGW456L13_558 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 655,167 to 656,603
_558
PfGW456L13_559 - Acetyl-CoA hydrolase (EC 3.1.2.1), at 656,817 to 658,310
_559
Position (kb) 655
656
657 Strain fitness (log2 ratio) -2
-1
0
1
2 at 655.323 kb on + strand, within PfGW456L13_558 at 655.323 kb on + strand, within PfGW456L13_558 at 655.323 kb on + strand, within PfGW456L13_558 at 655.356 kb on - strand, within PfGW456L13_558 at 655.363 kb on - strand, within PfGW456L13_558 at 655.974 kb on + strand, within PfGW456L13_558 at 656.601 kb on + strand at 656.672 kb on + strand at 656.673 kb on - strand at 656.723 kb on + strand at 656.775 kb on + strand at 656.776 kb on - strand at 656.792 kb on + strand at 656.793 kb on - strand at 656.793 kb on - strand at 656.800 kb on - strand at 656.808 kb on + strand at 656.808 kb on + strand at 656.809 kb on - strand at 656.809 kb on - strand at 656.820 kb on + strand at 656.821 kb on - strand at 656.821 kb on - strand at 656.821 kb on - strand at 656.821 kb on - strand at 656.821 kb on - strand at 656.821 kb on - strand at 656.821 kb on - strand at 656.821 kb on - strand at 657.236 kb on + strand, within PfGW456L13_559 at 657.237 kb on - strand, within PfGW456L13_559 at 657.237 kb on - strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.363 kb on + strand, within PfGW456L13_559 at 657.363 kb on + strand, within PfGW456L13_559 at 657.363 kb on + strand, within PfGW456L13_559 at 657.364 kb on - strand, within PfGW456L13_559 at 657.364 kb on - strand, within PfGW456L13_559 at 657.364 kb on - strand, within PfGW456L13_559 at 657.595 kb on + strand, within PfGW456L13_559
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.03 mg/ml remove 655,323 + PfGW456L13_558 0.11 -0.4 655,323 + PfGW456L13_558 0.11 -0.5 655,323 + PfGW456L13_558 0.11 +0.4 655,356 - PfGW456L13_558 0.13 -0.5 655,363 - PfGW456L13_558 0.14 -0.9 655,974 + PfGW456L13_558 0.56 -1.7 656,601 + -0.2 656,672 + +0.4 656,673 - -0.3 656,723 + +0.0 656,775 + +0.4 656,776 - -0.2 656,792 + -0.4 656,793 - +0.1 656,793 - -0.2 656,800 - -0.6 656,808 + -0.9 656,808 + -0.4 656,809 - +0.9 656,809 - -0.7 656,820 + +0.4 656,821 - -0.2 656,821 - +0.4 656,821 - +1.2 656,821 - -0.2 656,821 - +0.2 656,821 - -1.4 656,821 - -0.1 656,821 - +0.2 657,236 + PfGW456L13_559 0.28 +0.1 657,237 - PfGW456L13_559 0.28 -0.6 657,237 - PfGW456L13_559 0.28 -0.6 657,351 + PfGW456L13_559 0.36 -0.2 657,351 + PfGW456L13_559 0.36 +0.2 657,351 + PfGW456L13_559 0.36 -0.2 657,351 + PfGW456L13_559 0.36 -1.2 657,351 + PfGW456L13_559 0.36 +0.5 657,351 + PfGW456L13_559 0.36 +1.8 657,351 + PfGW456L13_559 0.36 +1.0 657,351 + PfGW456L13_559 0.36 +0.3 657,351 + PfGW456L13_559 0.36 -0.0 657,351 + PfGW456L13_559 0.36 +0.0 657,351 + PfGW456L13_559 0.36 +0.5 657,351 + PfGW456L13_559 0.36 -0.9 657,352 - PfGW456L13_559 0.36 -0.1 657,352 - PfGW456L13_559 0.36 +1.2 657,352 - PfGW456L13_559 0.36 -0.6 657,352 - PfGW456L13_559 0.36 +0.3 657,352 - PfGW456L13_559 0.36 -0.2 657,352 - PfGW456L13_559 0.36 +0.5 657,352 - PfGW456L13_559 0.36 +1.0 657,352 - PfGW456L13_559 0.36 +2.2 657,352 - PfGW456L13_559 0.36 +0.0 657,352 - PfGW456L13_559 0.36 -0.5 657,352 - PfGW456L13_559 0.36 +0.1 657,352 - PfGW456L13_559 0.36 +0.7 657,352 - PfGW456L13_559 0.36 +0.3 657,363 + PfGW456L13_559 0.37 -2.1 657,363 + PfGW456L13_559 0.37 +0.8 657,363 + PfGW456L13_559 0.37 +0.0 657,364 - PfGW456L13_559 0.37 -0.1 657,364 - PfGW456L13_559 0.37 +0.6 657,364 - PfGW456L13_559 0.37 +0.4 657,595 + PfGW456L13_559 0.52 -0.6
Or see this region's nucleotide sequence