Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4467

Experiment: Fusidic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4465 and PfGW456L13_4466 overlap by 6 nucleotidesPfGW456L13_4466 and PfGW456L13_4467 are separated by 103 nucleotidesPfGW456L13_4467 and PfGW456L13_4468 are separated by 178 nucleotides PfGW456L13_4465 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 4,990,099 to 4,991,220 _4465 PfGW456L13_4466 - hypothetical protein, at 4,991,215 to 4,991,439 _4466 PfGW456L13_4467 - ATP-dependent RNA helicase HrpA (EC 3.6.4.13), at 4,991,543 to 4,995,454 _4467 PfGW456L13_4468 - Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-), at 4,995,633 to 4,997,351 _4468 Position (kb) 4991 4992 4993 4994 4995 4996Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4990.562 kb on + strand, within PfGW456L13_4465at 4990.563 kb on - strand, within PfGW456L13_4465at 4990.711 kb on + strand, within PfGW456L13_4465at 4990.711 kb on + strand, within PfGW456L13_4465at 4990.711 kb on + strand, within PfGW456L13_4465at 4990.711 kb on + strand, within PfGW456L13_4465at 4990.711 kb on + strand, within PfGW456L13_4465at 4990.712 kb on - strand, within PfGW456L13_4465at 4990.826 kb on + strand, within PfGW456L13_4465at 4991.132 kb on + strandat 4991.132 kb on + strandat 4991.132 kb on + strandat 4991.132 kb on + strandat 4991.132 kb on + strandat 4991.132 kb on + strandat 4991.133 kb on - strandat 4991.133 kb on - strandat 4991.133 kb on - strandat 4991.133 kb on - strandat 4991.133 kb on - strandat 4991.133 kb on - strandat 4991.136 kb on + strandat 4991.136 kb on + strandat 4991.136 kb on + strandat 4991.137 kb on - strandat 4991.137 kb on - strandat 4991.173 kb on - strandat 4991.186 kb on + strandat 4991.186 kb on + strandat 4991.186 kb on + strandat 4991.187 kb on - strandat 4991.187 kb on - strandat 4991.214 kb on + strandat 4991.215 kb on - strandat 4991.215 kb on - strandat 4991.233 kb on - strandat 4991.233 kb on - strandat 4991.233 kb on - strandat 4991.266 kb on + strand, within PfGW456L13_4466at 4991.266 kb on + strand, within PfGW456L13_4466at 4991.272 kb on + strand, within PfGW456L13_4466at 4991.272 kb on + strand, within PfGW456L13_4466at 4991.285 kb on + strand, within PfGW456L13_4466at 4991.285 kb on + strand, within PfGW456L13_4466at 4991.286 kb on - strand, within PfGW456L13_4466at 4991.321 kb on + strand, within PfGW456L13_4466at 4991.322 kb on - strand, within PfGW456L13_4466at 4991.351 kb on + strand, within PfGW456L13_4466at 4991.351 kb on + strand, within PfGW456L13_4466at 4991.352 kb on - strand, within PfGW456L13_4466at 4991.372 kb on - strand, within PfGW456L13_4466at 4991.391 kb on + strand, within PfGW456L13_4466at 4991.431 kb on + strandat 4991.431 kb on + strandat 4991.431 kb on + strandat 4991.431 kb on + strandat 4991.431 kb on + strandat 4991.431 kb on + strandat 4991.431 kb on + strandat 4991.431 kb on + strandat 4991.431 kb on + strandat 4991.431 kb on + strandat 4991.431 kb on + strandat 4991.432 kb on - strandat 4991.432 kb on - strandat 4991.432 kb on - strandat 4991.432 kb on - strandat 4991.432 kb on - strandat 4991.432 kb on - strandat 4991.437 kb on + strandat 4991.437 kb on + strandat 4991.438 kb on - strandat 4991.531 kb on + strandat 4991.531 kb on + strandat 4991.552 kb on + strandat 4991.553 kb on - strandat 4991.655 kb on + strandat 4991.656 kb on - strandat 4991.656 kb on - strandat 4991.656 kb on - strandat 4991.656 kb on - strandat 4991.656 kb on - strandat 4991.715 kb on + strandat 4991.715 kb on + strandat 4991.716 kb on - strandat 4991.716 kb on - strandat 4991.874 kb on + strandat 4991.875 kb on - strandat 4991.875 kb on - strandat 4991.875 kb on - strandat 4992.864 kb on + strand, within PfGW456L13_4467at 4992.864 kb on + strand, within PfGW456L13_4467at 4992.875 kb on + strand, within PfGW456L13_4467at 4992.901 kb on + strand, within PfGW456L13_4467at 4993.056 kb on + strand, within PfGW456L13_4467at 4993.056 kb on + strand, within PfGW456L13_4467at 4993.056 kb on + strand, within PfGW456L13_4467at 4993.057 kb on - strand, within PfGW456L13_4467at 4993.057 kb on - strand, within PfGW456L13_4467at 4993.065 kb on + strand, within PfGW456L13_4467at 4993.065 kb on + strand, within PfGW456L13_4467at 4993.066 kb on - strand, within PfGW456L13_4467at 4993.243 kb on - strand, within PfGW456L13_4467at 4993.406 kb on - strand, within PfGW456L13_4467at 4993.406 kb on - strand, within PfGW456L13_4467at 4993.406 kb on - strand, within PfGW456L13_4467at 4993.413 kb on + strand, within PfGW456L13_4467at 4993.414 kb on - strand, within PfGW456L13_4467at 4993.594 kb on - strand, within PfGW456L13_4467at 4993.609 kb on + strand, within PfGW456L13_4467at 4993.609 kb on + strand, within PfGW456L13_4467at 4993.609 kb on + strand, within PfGW456L13_4467at 4993.609 kb on + strand, within PfGW456L13_4467at 4993.609 kb on + strand, within PfGW456L13_4467at 4993.714 kb on + strand, within PfGW456L13_4467at 4994.037 kb on + strand, within PfGW456L13_4467at 4994.037 kb on + strand, within PfGW456L13_4467at 4994.038 kb on - strand, within PfGW456L13_4467at 4994.075 kb on - strand, within PfGW456L13_4467at 4994.199 kb on + strand, within PfGW456L13_4467at 4994.199 kb on + strand, within PfGW456L13_4467at 4994.200 kb on - strand, within PfGW456L13_4467at 4994.245 kb on + strand, within PfGW456L13_4467at 4994.463 kb on + strand, within PfGW456L13_4467at 4994.463 kb on + strand, within PfGW456L13_4467at 4994.464 kb on - strand, within PfGW456L13_4467at 4994.590 kb on - strand, within PfGW456L13_4467at 4994.590 kb on - strand, within PfGW456L13_4467at 4994.590 kb on - strand, within PfGW456L13_4467at 4994.723 kb on + strand, within PfGW456L13_4467at 4994.724 kb on - strand, within PfGW456L13_4467at 4994.835 kb on + strand, within PfGW456L13_4467at 4994.898 kb on + strand, within PfGW456L13_4467at 4994.898 kb on + strand, within PfGW456L13_4467at 4994.910 kb on + strand, within PfGW456L13_4467at 4994.910 kb on + strand, within PfGW456L13_4467at 4995.003 kb on + strand, within PfGW456L13_4467at 4995.477 kb on - strandat 4995.558 kb on + strandat 4995.558 kb on + strandat 4995.558 kb on + strandat 4995.558 kb on + strandat 4995.558 kb on + strandat 4995.558 kb on + strandat 4995.558 kb on + strandat 4995.558 kb on + strandat 4995.558 kb on + strandat 4995.558 kb on + strandat 4995.559 kb on - strandat 4995.559 kb on - strandat 4995.559 kb on - strandat 4995.559 kb on - strandat 4995.559 kb on - strandat 4995.559 kb on - strandat 4995.559 kb on - strandat 4995.559 kb on - strandat 4995.559 kb on - strandat 4995.559 kb on - strandat 4995.559 kb on - strandat 4995.559 kb on - strandat 4995.560 kb on + strandat 4995.560 kb on + strandat 4995.634 kb on + strandat 4995.634 kb on + strandat 4995.634 kb on + strandat 4995.635 kb on - strandat 4995.635 kb on - strandat 4995.635 kb on - strandat 4995.635 kb on - strandat 4995.730 kb on + strandat 4995.730 kb on + strandat 4995.730 kb on + strandat 4995.730 kb on + strandat 4995.730 kb on + strandat 4995.730 kb on + strandat 4995.730 kb on + strandat 4995.730 kb on + strandat 4995.731 kb on - strandat 4995.731 kb on - strandat 4995.731 kb on - strandat 4995.731 kb on - strandat 4995.731 kb on - strandat 4995.731 kb on - strandat 4995.731 kb on - strandat 4995.810 kb on + strand, within PfGW456L13_4468at 4995.811 kb on - strand, within PfGW456L13_4468at 4995.811 kb on - strand, within PfGW456L13_4468at 4995.832 kb on + strand, within PfGW456L13_4468at 4995.833 kb on - strand, within PfGW456L13_4468at 4995.866 kb on + strand, within PfGW456L13_4468at 4995.866 kb on + strand, within PfGW456L13_4468at 4995.866 kb on + strand, within PfGW456L13_4468at 4995.867 kb on - strand, within PfGW456L13_4468at 4995.867 kb on - strand, within PfGW456L13_4468at 4995.867 kb on - strand, within PfGW456L13_4468at 4995.867 kb on - strand, within PfGW456L13_4468at 4995.867 kb on - strand, within PfGW456L13_4468at 4995.923 kb on - strand, within PfGW456L13_4468at 4995.928 kb on + strand, within PfGW456L13_4468at 4995.928 kb on + strand, within PfGW456L13_4468at 4995.929 kb on - strand, within PfGW456L13_4468at 4995.929 kb on - strand, within PfGW456L13_4468at 4996.028 kb on - strand, within PfGW456L13_4468at 4996.075 kb on + strand, within PfGW456L13_4468at 4996.075 kb on + strand, within PfGW456L13_4468

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.03 mg/ml
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4,990,562 + PfGW456L13_4465 0.41 -0.7
4,990,563 - PfGW456L13_4465 0.41 -0.1
4,990,711 + PfGW456L13_4465 0.55 +1.0
4,990,711 + PfGW456L13_4465 0.55 +0.1
4,990,711 + PfGW456L13_4465 0.55 +0.7
4,990,711 + PfGW456L13_4465 0.55 -0.2
4,990,711 + PfGW456L13_4465 0.55 +0.6
4,990,712 - PfGW456L13_4465 0.55 -0.5
4,990,826 + PfGW456L13_4465 0.65 -1.5
4,991,132 + +0.1
4,991,132 + -0.6
4,991,132 + +0.6
4,991,132 + +0.1
4,991,132 + -0.3
4,991,132 + -2.5
4,991,133 - +0.2
4,991,133 - +2.7
4,991,133 - -1.4
4,991,133 - +1.1
4,991,133 - -0.2
4,991,133 - +0.2
4,991,136 + +0.4
4,991,136 + -0.3
4,991,136 + +0.2
4,991,137 - +1.2
4,991,137 - -0.1
4,991,173 - -0.3
4,991,186 + -0.3
4,991,186 + +1.0
4,991,186 + -0.1
4,991,187 - +1.6
4,991,187 - -1.8
4,991,214 + +0.5
4,991,215 - +1.7
4,991,215 - -0.8
4,991,233 - -1.0
4,991,233 - +0.1
4,991,233 - -0.6
4,991,266 + PfGW456L13_4466 0.23 -0.5
4,991,266 + PfGW456L13_4466 0.23 +0.2
4,991,272 + PfGW456L13_4466 0.25 -0.3
4,991,272 + PfGW456L13_4466 0.25 -0.6
4,991,285 + PfGW456L13_4466 0.31 +1.8
4,991,285 + PfGW456L13_4466 0.31 +0.5
4,991,286 - PfGW456L13_4466 0.32 +0.7
4,991,321 + PfGW456L13_4466 0.47 +0.2
4,991,322 - PfGW456L13_4466 0.48 +1.2
4,991,351 + PfGW456L13_4466 0.60 +0.6
4,991,351 + PfGW456L13_4466 0.60 -0.6
4,991,352 - PfGW456L13_4466 0.61 +0.1
4,991,372 - PfGW456L13_4466 0.70 +1.2
4,991,391 + PfGW456L13_4466 0.78 +0.3
4,991,431 + -2.0
4,991,431 + -0.6
4,991,431 + -0.4
4,991,431 + +1.5
4,991,431 + +1.2
4,991,431 + -0.4
4,991,431 + +0.5
4,991,431 + -0.6
4,991,431 + -2.0
4,991,431 + -1.0
4,991,431 + +0.2
4,991,432 - +0.1
4,991,432 - -0.3
4,991,432 - -0.1
4,991,432 - -0.1
4,991,432 - +0.2
4,991,432 - -0.1
4,991,437 + +0.3
4,991,437 + +0.2
4,991,438 - +0.6
4,991,531 + +0.2
4,991,531 + -0.9
4,991,552 + -1.0
4,991,553 - -0.9
4,991,655 + -4.1
4,991,656 - -0.5
4,991,656 - -2.6
4,991,656 - -0.6
4,991,656 - -2.6
4,991,656 - -2.1
4,991,715 + -2.2
4,991,715 + -1.1
4,991,716 - -3.1
4,991,716 - -1.7
4,991,874 + -0.6
4,991,875 - -0.4
4,991,875 - -1.5
4,991,875 - -0.9
4,992,864 + PfGW456L13_4467 0.34 -1.7
4,992,864 + PfGW456L13_4467 0.34 -1.1
4,992,875 + PfGW456L13_4467 0.34 -0.9
4,992,901 + PfGW456L13_4467 0.35 -2.5
4,993,056 + PfGW456L13_4467 0.39 -3.4
4,993,056 + PfGW456L13_4467 0.39 -1.5
4,993,056 + PfGW456L13_4467 0.39 -0.8
4,993,057 - PfGW456L13_4467 0.39 -1.7
4,993,057 - PfGW456L13_4467 0.39 -1.0
4,993,065 + PfGW456L13_4467 0.39 -3.5
4,993,065 + PfGW456L13_4467 0.39 -2.0
4,993,066 - PfGW456L13_4467 0.39 -0.9
4,993,243 - PfGW456L13_4467 0.43 -3.8
4,993,406 - PfGW456L13_4467 0.48 -0.4
4,993,406 - PfGW456L13_4467 0.48 -1.6
4,993,406 - PfGW456L13_4467 0.48 -3.6
4,993,413 + PfGW456L13_4467 0.48 -2.2
4,993,414 - PfGW456L13_4467 0.48 -2.4
4,993,594 - PfGW456L13_4467 0.52 -1.6
4,993,609 + PfGW456L13_4467 0.53 -0.8
4,993,609 + PfGW456L13_4467 0.53 -1.4
4,993,609 + PfGW456L13_4467 0.53 -2.4
4,993,609 + PfGW456L13_4467 0.53 -0.9
4,993,609 + PfGW456L13_4467 0.53 -3.7
4,993,714 + PfGW456L13_4467 0.55 -1.8
4,994,037 + PfGW456L13_4467 0.64 -2.4
4,994,037 + PfGW456L13_4467 0.64 -1.3
4,994,038 - PfGW456L13_4467 0.64 -2.4
4,994,075 - PfGW456L13_4467 0.65 -2.3
4,994,199 + PfGW456L13_4467 0.68 -1.0
4,994,199 + PfGW456L13_4467 0.68 -1.0
4,994,200 - PfGW456L13_4467 0.68 -1.0
4,994,245 + PfGW456L13_4467 0.69 -2.8
4,994,463 + PfGW456L13_4467 0.75 -4.6
4,994,463 + PfGW456L13_4467 0.75 -2.0
4,994,464 - PfGW456L13_4467 0.75 -0.0
4,994,590 - PfGW456L13_4467 0.78 -2.5
4,994,590 - PfGW456L13_4467 0.78 -1.6
4,994,590 - PfGW456L13_4467 0.78 -1.6
4,994,723 + PfGW456L13_4467 0.81 -0.4
4,994,724 - PfGW456L13_4467 0.81 -1.4
4,994,835 + PfGW456L13_4467 0.84 -2.3
4,994,898 + PfGW456L13_4467 0.86 -1.8
4,994,898 + PfGW456L13_4467 0.86 -2.6
4,994,910 + PfGW456L13_4467 0.86 -1.2
4,994,910 + PfGW456L13_4467 0.86 -1.6
4,995,003 + PfGW456L13_4467 0.88 -1.9
4,995,477 - +0.5
4,995,558 + -0.8
4,995,558 + -0.9
4,995,558 + +1.0
4,995,558 + +2.2
4,995,558 + -1.8
4,995,558 + -0.9
4,995,558 + -0.0
4,995,558 + +0.0
4,995,558 + -0.3
4,995,558 + +1.0
4,995,559 - +2.3
4,995,559 - +0.5
4,995,559 - +0.7
4,995,559 - +0.2
4,995,559 - +0.2
4,995,559 - +0.1
4,995,559 - +0.7
4,995,559 - -0.2
4,995,559 - +1.9
4,995,559 - +1.1
4,995,559 - +0.8
4,995,559 - +1.0
4,995,560 + -2.0
4,995,560 + +3.3
4,995,634 + +2.0
4,995,634 + -1.0
4,995,634 + -0.6
4,995,635 - -0.6
4,995,635 - -0.0
4,995,635 - +2.4
4,995,635 - +0.0
4,995,730 + -0.1
4,995,730 + -2.1
4,995,730 + -1.1
4,995,730 + -0.6
4,995,730 + +0.3
4,995,730 + +1.5
4,995,730 + +0.3
4,995,730 + -1.5
4,995,731 - +1.5
4,995,731 - -0.6
4,995,731 - +0.8
4,995,731 - +0.6
4,995,731 - +1.5
4,995,731 - +1.3
4,995,731 - -0.2
4,995,810 + PfGW456L13_4468 0.10 +0.1
4,995,811 - PfGW456L13_4468 0.10 -0.3
4,995,811 - PfGW456L13_4468 0.10 -0.6
4,995,832 + PfGW456L13_4468 0.12 -0.7
4,995,833 - PfGW456L13_4468 0.12 -0.4
4,995,866 + PfGW456L13_4468 0.14 +0.2
4,995,866 + PfGW456L13_4468 0.14 +0.6
4,995,866 + PfGW456L13_4468 0.14 +0.8
4,995,867 - PfGW456L13_4468 0.14 +0.4
4,995,867 - PfGW456L13_4468 0.14 +0.7
4,995,867 - PfGW456L13_4468 0.14 +0.4
4,995,867 - PfGW456L13_4468 0.14 +1.1
4,995,867 - PfGW456L13_4468 0.14 +0.2
4,995,923 - PfGW456L13_4468 0.17 +0.4
4,995,928 + PfGW456L13_4468 0.17 +0.2
4,995,928 + PfGW456L13_4468 0.17 -0.1
4,995,929 - PfGW456L13_4468 0.17 -0.1
4,995,929 - PfGW456L13_4468 0.17 -0.6
4,996,028 - PfGW456L13_4468 0.23 -0.1
4,996,075 + PfGW456L13_4468 0.26 -0.4
4,996,075 + PfGW456L13_4468 0.26 -0.0

Or see this region's nucleotide sequence