Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3661

Experiment: Fusidic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3659 and PfGW456L13_3660 are separated by 216 nucleotidesPfGW456L13_3660 and PfGW456L13_3661 are separated by 330 nucleotidesPfGW456L13_3661 and PfGW456L13_3662 are separated by 178 nucleotides PfGW456L13_3659 - hypothetical protein, at 4,120,045 to 4,120,617 _3659 PfGW456L13_3660 - Isochorismate pyruvate-lyase (EC 4.-.-.-), at 4,120,834 to 4,121,160 _3660 PfGW456L13_3661 - probable acetyltransferase, at 4,121,491 to 4,121,664 _3661 PfGW456L13_3662 - FIG01289214: hypothetical protein, at 4,121,843 to 4,122,760 _3662 Position (kb) 4121 4122Strain fitness (log2 ratio) -2 -1 0 1 2at 4120.531 kb on + strand, within PfGW456L13_3659at 4120.531 kb on + strand, within PfGW456L13_3659at 4120.615 kb on + strandat 4120.616 kb on - strandat 4120.623 kb on + strandat 4120.623 kb on + strandat 4120.693 kb on + strandat 4120.693 kb on + strandat 4120.694 kb on - strandat 4120.694 kb on - strandat 4120.694 kb on - strandat 4120.694 kb on - strandat 4120.694 kb on - strandat 4120.753 kb on - strandat 4120.788 kb on - strandat 4120.788 kb on - strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.832 kb on - strandat 4120.832 kb on - strandat 4120.832 kb on - strandat 4120.832 kb on - strandat 4120.832 kb on - strandat 4120.832 kb on - strandat 4120.832 kb on - strandat 4120.920 kb on + strand, within PfGW456L13_3660at 4120.952 kb on + strand, within PfGW456L13_3660at 4120.952 kb on + strand, within PfGW456L13_3660at 4120.953 kb on - strand, within PfGW456L13_3660at 4120.953 kb on - strand, within PfGW456L13_3660at 4120.953 kb on - strand, within PfGW456L13_3660at 4120.953 kb on - strand, within PfGW456L13_3660at 4120.953 kb on - strand, within PfGW456L13_3660at 4120.953 kb on - strand, within PfGW456L13_3660at 4120.953 kb on - strand, within PfGW456L13_3660at 4121.083 kb on + strand, within PfGW456L13_3660at 4121.083 kb on + strand, within PfGW456L13_3660at 4121.083 kb on + strand, within PfGW456L13_3660at 4121.083 kb on + strand, within PfGW456L13_3660at 4121.083 kb on + strand, within PfGW456L13_3660at 4121.083 kb on + strand, within PfGW456L13_3660at 4121.083 kb on + strand, within PfGW456L13_3660at 4121.084 kb on - strand, within PfGW456L13_3660at 4121.084 kb on - strand, within PfGW456L13_3660at 4121.084 kb on - strand, within PfGW456L13_3660at 4121.084 kb on - strand, within PfGW456L13_3660at 4121.084 kb on - strand, within PfGW456L13_3660at 4121.084 kb on - strand, within PfGW456L13_3660at 4121.158 kb on + strandat 4121.215 kb on + strandat 4121.215 kb on + strandat 4121.215 kb on + strandat 4121.216 kb on - strandat 4121.246 kb on + strandat 4121.271 kb on + strandat 4121.272 kb on - strandat 4121.382 kb on + strandat 4121.383 kb on - strandat 4121.404 kb on + strandat 4121.404 kb on + strandat 4121.529 kb on + strand, within PfGW456L13_3661at 4121.529 kb on + strand, within PfGW456L13_3661at 4121.529 kb on + strand, within PfGW456L13_3661at 4121.529 kb on + strand, within PfGW456L13_3661at 4121.529 kb on + strand, within PfGW456L13_3661at 4121.529 kb on + strand, within PfGW456L13_3661at 4121.529 kb on + strand, within PfGW456L13_3661at 4121.530 kb on - strand, within PfGW456L13_3661at 4121.530 kb on - strand, within PfGW456L13_3661at 4121.536 kb on - strand, within PfGW456L13_3661at 4121.536 kb on - strand, within PfGW456L13_3661at 4121.641 kb on + strand, within PfGW456L13_3661at 4121.641 kb on + strand, within PfGW456L13_3661at 4121.641 kb on + strand, within PfGW456L13_3661at 4121.641 kb on + strandat 4121.642 kb on - strand, within PfGW456L13_3661at 4121.642 kb on - strand, within PfGW456L13_3661at 4121.642 kb on - strand, within PfGW456L13_3661at 4121.642 kb on - strand, within PfGW456L13_3661at 4121.689 kb on - strandat 4121.701 kb on + strandat 4121.701 kb on + strandat 4121.701 kb on + strandat 4121.701 kb on + strandat 4121.701 kb on + strandat 4121.702 kb on - strandat 4121.741 kb on + strandat 4121.742 kb on - strandat 4121.742 kb on - strandat 4121.742 kb on - strandat 4121.754 kb on + strandat 4121.754 kb on + strandat 4121.755 kb on - strandat 4121.811 kb on - strandat 4121.972 kb on + strand, within PfGW456L13_3662at 4122.019 kb on + strand, within PfGW456L13_3662at 4122.019 kb on + strand, within PfGW456L13_3662at 4122.019 kb on + strand, within PfGW456L13_3662at 4122.019 kb on + strand, within PfGW456L13_3662at 4122.041 kb on + strand, within PfGW456L13_3662at 4122.287 kb on + strand, within PfGW456L13_3662at 4122.287 kb on + strand, within PfGW456L13_3662at 4122.350 kb on + strand, within PfGW456L13_3662at 4122.350 kb on + strand, within PfGW456L13_3662at 4122.350 kb on + strand, within PfGW456L13_3662at 4122.413 kb on + strand, within PfGW456L13_3662at 4122.413 kb on + strand, within PfGW456L13_3662at 4122.413 kb on + strand, within PfGW456L13_3662at 4122.413 kb on + strand, within PfGW456L13_3662at 4122.413 kb on + strand, within PfGW456L13_3662at 4122.522 kb on + strand, within PfGW456L13_3662at 4122.533 kb on + strand, within PfGW456L13_3662at 4122.533 kb on + strand, within PfGW456L13_3662at 4122.533 kb on + strand, within PfGW456L13_3662at 4122.533 kb on + strand, within PfGW456L13_3662at 4122.533 kb on + strand, within PfGW456L13_3662

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.03 mg/ml
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4,120,531 + PfGW456L13_3659 0.85 -0.3
4,120,531 + PfGW456L13_3659 0.85 -0.1
4,120,615 + -1.7
4,120,616 - +0.8
4,120,623 + -2.2
4,120,623 + +2.2
4,120,693 + -2.0
4,120,693 + -2.2
4,120,694 - -0.6
4,120,694 - +0.3
4,120,694 - -0.2
4,120,694 - +0.8
4,120,694 - -0.6
4,120,753 - -0.0
4,120,788 - -1.9
4,120,788 - -0.7
4,120,831 + -0.3
4,120,831 + +2.7
4,120,831 + -0.1
4,120,831 + +0.8
4,120,831 + -0.1
4,120,831 + +0.7
4,120,831 + -0.8
4,120,831 + +0.1
4,120,831 + -0.9
4,120,832 - +0.3
4,120,832 - +0.8
4,120,832 - +0.7
4,120,832 - -1.2
4,120,832 - -0.5
4,120,832 - +0.8
4,120,832 - -0.9
4,120,920 + PfGW456L13_3660 0.26 -1.3
4,120,952 + PfGW456L13_3660 0.36 -0.2
4,120,952 + PfGW456L13_3660 0.36 -0.2
4,120,953 - PfGW456L13_3660 0.36 +0.1
4,120,953 - PfGW456L13_3660 0.36 -0.2
4,120,953 - PfGW456L13_3660 0.36 -0.2
4,120,953 - PfGW456L13_3660 0.36 +0.2
4,120,953 - PfGW456L13_3660 0.36 +0.7
4,120,953 - PfGW456L13_3660 0.36 +0.7
4,120,953 - PfGW456L13_3660 0.36 -0.6
4,121,083 + PfGW456L13_3660 0.76 -0.8
4,121,083 + PfGW456L13_3660 0.76 +0.9
4,121,083 + PfGW456L13_3660 0.76 +0.2
4,121,083 + PfGW456L13_3660 0.76 +1.1
4,121,083 + PfGW456L13_3660 0.76 +0.7
4,121,083 + PfGW456L13_3660 0.76 +0.1
4,121,083 + PfGW456L13_3660 0.76 -0.9
4,121,084 - PfGW456L13_3660 0.76 -0.5
4,121,084 - PfGW456L13_3660 0.76 +0.3
4,121,084 - PfGW456L13_3660 0.76 -0.6
4,121,084 - PfGW456L13_3660 0.76 -0.2
4,121,084 - PfGW456L13_3660 0.76 -0.2
4,121,084 - PfGW456L13_3660 0.76 +0.7
4,121,158 + +0.2
4,121,215 + -0.5
4,121,215 + +0.4
4,121,215 + +0.3
4,121,216 - -0.0
4,121,246 + -0.0
4,121,271 + +0.0
4,121,272 - -1.3
4,121,382 + -0.7
4,121,383 - -0.3
4,121,404 + -2.3
4,121,404 + -1.1
4,121,529 + PfGW456L13_3661 0.22 -0.8
4,121,529 + PfGW456L13_3661 0.22 -0.6
4,121,529 + PfGW456L13_3661 0.22 -1.2
4,121,529 + PfGW456L13_3661 0.22 -0.3
4,121,529 + PfGW456L13_3661 0.22 +1.4
4,121,529 + PfGW456L13_3661 0.22 +1.7
4,121,529 + PfGW456L13_3661 0.22 +1.9
4,121,530 - PfGW456L13_3661 0.22 -0.3
4,121,530 - PfGW456L13_3661 0.22 +0.4
4,121,536 - PfGW456L13_3661 0.26 -0.3
4,121,536 - PfGW456L13_3661 0.26 -0.3
4,121,641 + PfGW456L13_3661 0.86 -2.0
4,121,641 + PfGW456L13_3661 0.86 -0.6
4,121,641 + PfGW456L13_3661 0.86 -0.7
4,121,641 + +0.7
4,121,642 - PfGW456L13_3661 0.87 -0.7
4,121,642 - PfGW456L13_3661 0.87 -0.6
4,121,642 - PfGW456L13_3661 0.87 -1.3
4,121,642 - PfGW456L13_3661 0.87 +0.3
4,121,689 - -0.5
4,121,701 + +0.2
4,121,701 + +0.7
4,121,701 + -0.5
4,121,701 + +1.5
4,121,701 + +0.9
4,121,702 - -1.1
4,121,741 + -1.3
4,121,742 - +2.2
4,121,742 - +0.4
4,121,742 - -0.2
4,121,754 + -0.0
4,121,754 + -1.7
4,121,755 - +1.5
4,121,811 - +0.3
4,121,972 + PfGW456L13_3662 0.14 -0.7
4,122,019 + PfGW456L13_3662 0.19 -1.3
4,122,019 + PfGW456L13_3662 0.19 +0.2
4,122,019 + PfGW456L13_3662 0.19 +0.7
4,122,019 + PfGW456L13_3662 0.19 +0.5
4,122,041 + PfGW456L13_3662 0.22 +0.4
4,122,287 + PfGW456L13_3662 0.48 +0.2
4,122,287 + PfGW456L13_3662 0.48 -1.2
4,122,350 + PfGW456L13_3662 0.55 -0.9
4,122,350 + PfGW456L13_3662 0.55 -0.1
4,122,350 + PfGW456L13_3662 0.55 -0.0
4,122,413 + PfGW456L13_3662 0.62 +0.1
4,122,413 + PfGW456L13_3662 0.62 +2.0
4,122,413 + PfGW456L13_3662 0.62 +0.2
4,122,413 + PfGW456L13_3662 0.62 -0.6
4,122,413 + PfGW456L13_3662 0.62 +0.1
4,122,522 + PfGW456L13_3662 0.74 -1.7
4,122,533 + PfGW456L13_3662 0.75 -0.3
4,122,533 + PfGW456L13_3662 0.75 +0.1
4,122,533 + PfGW456L13_3662 0.75 +0.2
4,122,533 + PfGW456L13_3662 0.75 +0.2
4,122,533 + PfGW456L13_3662 0.75 -0.5

Or see this region's nucleotide sequence