Experiment: Fusidic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3305 and PfGW456L13_3306 overlap by 13 nucleotides PfGW456L13_3306 and PfGW456L13_3307 overlap by 15 nucleotides PfGW456L13_3307 and PfGW456L13_3308 overlap by 4 nucleotides
PfGW456L13_3305 - BatD, at 3,714,237 to 3,715,886
_3305
PfGW456L13_3306 - hypothetical protein, at 3,715,874 to 3,716,209
_3306
PfGW456L13_3307 - Exonuclease SbcD, at 3,716,195 to 3,717,439
_3307
PfGW456L13_3308 - Exonuclease SbcC, at 3,717,436 to 3,721,077
_3308
Position (kb)
3716
3717
3718 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3715.493 kb on + strand, within PfGW456L13_3305 at 3715.720 kb on + strand, within PfGW456L13_3305 at 3715.761 kb on + strand at 3715.761 kb on + strand at 3715.762 kb on - strand at 3715.779 kb on + strand at 3715.780 kb on - strand at 3715.884 kb on + strand at 3715.885 kb on - strand at 3715.885 kb on - strand at 3715.885 kb on - strand at 3715.885 kb on - strand at 3715.885 kb on - strand at 3715.957 kb on - strand, within PfGW456L13_3306 at 3716.085 kb on + strand, within PfGW456L13_3306 at 3716.085 kb on + strand, within PfGW456L13_3306 at 3716.120 kb on + strand, within PfGW456L13_3306 at 3716.120 kb on + strand, within PfGW456L13_3306 at 3716.121 kb on - strand, within PfGW456L13_3306 at 3716.126 kb on + strand, within PfGW456L13_3306 at 3716.170 kb on + strand, within PfGW456L13_3306 at 3716.171 kb on - strand, within PfGW456L13_3306 at 3716.174 kb on + strand, within PfGW456L13_3306 at 3716.174 kb on + strand, within PfGW456L13_3306 at 3716.175 kb on - strand, within PfGW456L13_3306 at 3716.175 kb on - strand, within PfGW456L13_3306 at 3716.384 kb on + strand, within PfGW456L13_3307 at 3716.666 kb on + strand, within PfGW456L13_3307 at 3716.666 kb on + strand, within PfGW456L13_3307 at 3716.666 kb on + strand, within PfGW456L13_3307 at 3716.666 kb on + strand, within PfGW456L13_3307 at 3716.666 kb on + strand, within PfGW456L13_3307 at 3716.666 kb on + strand, within PfGW456L13_3307 at 3716.666 kb on + strand, within PfGW456L13_3307 at 3716.666 kb on + strand, within PfGW456L13_3307 at 3716.667 kb on - strand, within PfGW456L13_3307 at 3716.861 kb on + strand, within PfGW456L13_3307 at 3716.862 kb on - strand, within PfGW456L13_3307 at 3716.862 kb on - strand, within PfGW456L13_3307 at 3716.862 kb on - strand, within PfGW456L13_3307 at 3716.862 kb on - strand, within PfGW456L13_3307 at 3716.922 kb on - strand, within PfGW456L13_3307 at 3716.963 kb on + strand, within PfGW456L13_3307 at 3716.964 kb on - strand, within PfGW456L13_3307 at 3716.964 kb on - strand, within PfGW456L13_3307 at 3717.252 kb on - strand, within PfGW456L13_3307 at 3717.561 kb on + strand at 3717.693 kb on - strand at 3717.715 kb on + strand at 3717.874 kb on + strand, within PfGW456L13_3308 at 3717.874 kb on + strand, within PfGW456L13_3308 at 3717.875 kb on - strand, within PfGW456L13_3308 at 3717.875 kb on - strand, within PfGW456L13_3308 at 3717.875 kb on - strand, within PfGW456L13_3308 at 3718.025 kb on - strand, within PfGW456L13_3308 at 3718.025 kb on - strand, within PfGW456L13_3308 at 3718.025 kb on - strand, within PfGW456L13_3308
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.03 mg/ml remove 3,715,493 + PfGW456L13_3305 0.76 -1.7 3,715,720 + PfGW456L13_3305 0.90 -1.8 3,715,761 + -2.7 3,715,761 + -2.7 3,715,762 - -1.0 3,715,779 + -1.2 3,715,780 - +0.1 3,715,884 + +0.1 3,715,885 - -0.8 3,715,885 - -0.1 3,715,885 - -0.1 3,715,885 - +1.6 3,715,885 - +0.6 3,715,957 - PfGW456L13_3306 0.25 +0.3 3,716,085 + PfGW456L13_3306 0.63 -0.2 3,716,085 + PfGW456L13_3306 0.63 +0.5 3,716,120 + PfGW456L13_3306 0.73 -0.0 3,716,120 + PfGW456L13_3306 0.73 -0.4 3,716,121 - PfGW456L13_3306 0.74 +1.1 3,716,126 + PfGW456L13_3306 0.75 +1.0 3,716,170 + PfGW456L13_3306 0.88 +0.1 3,716,171 - PfGW456L13_3306 0.88 +0.0 3,716,174 + PfGW456L13_3306 0.89 +0.7 3,716,174 + PfGW456L13_3306 0.89 +0.6 3,716,175 - PfGW456L13_3306 0.90 -0.6 3,716,175 - PfGW456L13_3306 0.90 -1.2 3,716,384 + PfGW456L13_3307 0.15 +0.5 3,716,666 + PfGW456L13_3307 0.38 +0.1 3,716,666 + PfGW456L13_3307 0.38 +0.5 3,716,666 + PfGW456L13_3307 0.38 -1.4 3,716,666 + PfGW456L13_3307 0.38 -0.8 3,716,666 + PfGW456L13_3307 0.38 -1.5 3,716,666 + PfGW456L13_3307 0.38 +0.9 3,716,666 + PfGW456L13_3307 0.38 +0.6 3,716,666 + PfGW456L13_3307 0.38 -1.8 3,716,667 - PfGW456L13_3307 0.38 +0.3 3,716,861 + PfGW456L13_3307 0.53 -0.4 3,716,862 - PfGW456L13_3307 0.54 +1.1 3,716,862 - PfGW456L13_3307 0.54 +1.0 3,716,862 - PfGW456L13_3307 0.54 +0.6 3,716,862 - PfGW456L13_3307 0.54 +0.1 3,716,922 - PfGW456L13_3307 0.58 +0.9 3,716,963 + PfGW456L13_3307 0.62 -0.2 3,716,964 - PfGW456L13_3307 0.62 -0.3 3,716,964 - PfGW456L13_3307 0.62 -0.2 3,717,252 - PfGW456L13_3307 0.85 -0.6 3,717,561 + -0.9 3,717,693 - +0.8 3,717,715 + -0.5 3,717,874 + PfGW456L13_3308 0.12 -1.9 3,717,874 + PfGW456L13_3308 0.12 -0.6 3,717,875 - PfGW456L13_3308 0.12 +2.2 3,717,875 - PfGW456L13_3308 0.12 +0.0 3,717,875 - PfGW456L13_3308 0.12 -0.1 3,718,025 - PfGW456L13_3308 0.16 -0.7 3,718,025 - PfGW456L13_3308 0.16 -0.4 3,718,025 - PfGW456L13_3308 0.16 +0.1
Or see this region's nucleotide sequence