Experiment: Fusidic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3303 and PfGW456L13_3304 overlap by 4 nucleotides PfGW456L13_3304 and PfGW456L13_3305 overlap by 4 nucleotides
PfGW456L13_3303 - BatA (Bacteroides aerotolerance operon), at 3,711,428 to 3,712,510
_3303
PfGW456L13_3304 - TPR domain protein in aerotolerance operon, at 3,712,507 to 3,714,240
_3304
PfGW456L13_3305 - BatD, at 3,714,237 to 3,715,886
_3305
Position (kb)
3712
3713
3714
3715 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3711.615 kb on + strand, within PfGW456L13_3303 at 3711.615 kb on + strand, within PfGW456L13_3303 at 3711.615 kb on + strand, within PfGW456L13_3303 at 3711.615 kb on + strand, within PfGW456L13_3303 at 3711.615 kb on + strand, within PfGW456L13_3303 at 3711.864 kb on - strand, within PfGW456L13_3303 at 3711.864 kb on - strand, within PfGW456L13_3303 at 3712.229 kb on + strand, within PfGW456L13_3303 at 3712.229 kb on + strand, within PfGW456L13_3303 at 3712.230 kb on - strand, within PfGW456L13_3303 at 3712.337 kb on + strand, within PfGW456L13_3303 at 3712.337 kb on + strand, within PfGW456L13_3303 at 3712.337 kb on + strand, within PfGW456L13_3303 at 3712.337 kb on + strand, within PfGW456L13_3303 at 3712.337 kb on + strand, within PfGW456L13_3303 at 3712.338 kb on - strand, within PfGW456L13_3303 at 3712.338 kb on - strand, within PfGW456L13_3303 at 3712.338 kb on - strand, within PfGW456L13_3303 at 3712.338 kb on - strand, within PfGW456L13_3303 at 3712.338 kb on - strand, within PfGW456L13_3303 at 3712.338 kb on - strand, within PfGW456L13_3303 at 3712.681 kb on - strand, within PfGW456L13_3304 at 3712.921 kb on + strand, within PfGW456L13_3304 at 3712.922 kb on - strand, within PfGW456L13_3304 at 3713.533 kb on + strand, within PfGW456L13_3304 at 3713.534 kb on - strand, within PfGW456L13_3304 at 3713.534 kb on - strand, within PfGW456L13_3304 at 3713.589 kb on - strand, within PfGW456L13_3304 at 3713.589 kb on - strand, within PfGW456L13_3304 at 3713.589 kb on - strand, within PfGW456L13_3304 at 3713.660 kb on - strand, within PfGW456L13_3304 at 3713.726 kb on - strand, within PfGW456L13_3304 at 3713.726 kb on - strand, within PfGW456L13_3304 at 3713.782 kb on + strand, within PfGW456L13_3304 at 3713.782 kb on + strand, within PfGW456L13_3304 at 3713.868 kb on + strand, within PfGW456L13_3304 at 3713.868 kb on + strand, within PfGW456L13_3304 at 3713.869 kb on - strand, within PfGW456L13_3304 at 3713.869 kb on - strand, within PfGW456L13_3304 at 3714.199 kb on + strand at 3714.257 kb on - strand at 3714.257 kb on - strand at 3714.678 kb on + strand, within PfGW456L13_3305 at 3714.678 kb on + strand, within PfGW456L13_3305 at 3714.678 kb on + strand, within PfGW456L13_3305 at 3714.678 kb on + strand, within PfGW456L13_3305 at 3714.678 kb on + strand, within PfGW456L13_3305 at 3714.733 kb on - strand, within PfGW456L13_3305 at 3714.804 kb on + strand, within PfGW456L13_3305 at 3714.805 kb on - strand, within PfGW456L13_3305 at 3714.805 kb on - strand at 3714.934 kb on + strand, within PfGW456L13_3305 at 3715.026 kb on + strand, within PfGW456L13_3305 at 3715.027 kb on - strand, within PfGW456L13_3305
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.03 mg/ml remove 3,711,615 + PfGW456L13_3303 0.17 -0.4 3,711,615 + PfGW456L13_3303 0.17 -0.6 3,711,615 + PfGW456L13_3303 0.17 +0.4 3,711,615 + PfGW456L13_3303 0.17 -1.7 3,711,615 + PfGW456L13_3303 0.17 -3.0 3,711,864 - PfGW456L13_3303 0.40 -0.7 3,711,864 - PfGW456L13_3303 0.40 -1.7 3,712,229 + PfGW456L13_3303 0.74 -0.3 3,712,229 + PfGW456L13_3303 0.74 -1.1 3,712,230 - PfGW456L13_3303 0.74 +0.9 3,712,337 + PfGW456L13_3303 0.84 -0.1 3,712,337 + PfGW456L13_3303 0.84 -0.4 3,712,337 + PfGW456L13_3303 0.84 -0.8 3,712,337 + PfGW456L13_3303 0.84 -0.4 3,712,337 + PfGW456L13_3303 0.84 -1.4 3,712,338 - PfGW456L13_3303 0.84 -0.8 3,712,338 - PfGW456L13_3303 0.84 -0.7 3,712,338 - PfGW456L13_3303 0.84 -0.4 3,712,338 - PfGW456L13_3303 0.84 -1.7 3,712,338 - PfGW456L13_3303 0.84 -0.2 3,712,338 - PfGW456L13_3303 0.84 -0.8 3,712,681 - PfGW456L13_3304 0.10 -0.9 3,712,921 + PfGW456L13_3304 0.24 +0.0 3,712,922 - PfGW456L13_3304 0.24 +0.9 3,713,533 + PfGW456L13_3304 0.59 -0.1 3,713,534 - PfGW456L13_3304 0.59 -1.9 3,713,534 - PfGW456L13_3304 0.59 -0.5 3,713,589 - PfGW456L13_3304 0.62 -0.1 3,713,589 - PfGW456L13_3304 0.62 -0.2 3,713,589 - PfGW456L13_3304 0.62 -1.1 3,713,660 - PfGW456L13_3304 0.66 -0.7 3,713,726 - PfGW456L13_3304 0.70 -1.6 3,713,726 - PfGW456L13_3304 0.70 -1.2 3,713,782 + PfGW456L13_3304 0.74 -1.1 3,713,782 + PfGW456L13_3304 0.74 -1.6 3,713,868 + PfGW456L13_3304 0.78 -0.7 3,713,868 + PfGW456L13_3304 0.78 -1.4 3,713,869 - PfGW456L13_3304 0.79 -1.9 3,713,869 - PfGW456L13_3304 0.79 -1.0 3,714,199 + +0.6 3,714,257 - -1.0 3,714,257 - -0.1 3,714,678 + PfGW456L13_3305 0.27 +0.0 3,714,678 + PfGW456L13_3305 0.27 +0.0 3,714,678 + PfGW456L13_3305 0.27 -1.8 3,714,678 + PfGW456L13_3305 0.27 -3.2 3,714,678 + PfGW456L13_3305 0.27 -1.1 3,714,733 - PfGW456L13_3305 0.30 -1.5 3,714,804 + PfGW456L13_3305 0.34 -3.4 3,714,805 - PfGW456L13_3305 0.34 +1.0 3,714,805 - -1.4 3,714,934 + PfGW456L13_3305 0.42 -0.1 3,715,026 + PfGW456L13_3305 0.48 +1.0 3,715,027 - PfGW456L13_3305 0.48 -1.7
Or see this region's nucleotide sequence