Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2856

Experiment: Fusidic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2855 and PfGW456L13_2856 are separated by 151 nucleotidesPfGW456L13_2856 and PfGW456L13_2857 are separated by 119 nucleotidesPfGW456L13_2857 and PfGW456L13_2858 are separated by 254 nucleotides PfGW456L13_2855 - CobN component of cobalt chelatase involved in B12 biosynthesis, at 3,173,638 to 3,177,474 _2855 PfGW456L13_2856 - ChlI component of cobalt chelatase involved in B12 biosynthesis, at 3,177,626 to 3,178,633 _2856 PfGW456L13_2857 - ChlD component of cobalt chelatase involved in B12 biosynthesis, at 3,178,753 to 3,179,298 _2857 PfGW456L13_2858 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 3,179,553 to 3,180,776 _2858 Position (kb) 3177 3178 3179Strain fitness (log2 ratio) -3 -2 -1 0 1at 3176.699 kb on + strand, within PfGW456L13_2855at 3176.866 kb on + strand, within PfGW456L13_2855at 3176.867 kb on - strand, within PfGW456L13_2855at 3176.867 kb on - strand, within PfGW456L13_2855at 3176.867 kb on - strand, within PfGW456L13_2855at 3176.951 kb on + strand, within PfGW456L13_2855at 3177.010 kb on + strandat 3177.010 kb on + strand, within PfGW456L13_2855at 3177.011 kb on - strand, within PfGW456L13_2855at 3177.011 kb on - strand, within PfGW456L13_2855at 3177.011 kb on - strand, within PfGW456L13_2855at 3177.011 kb on - strand, within PfGW456L13_2855at 3177.011 kb on - strand, within PfGW456L13_2855at 3177.014 kb on - strand, within PfGW456L13_2855at 3177.076 kb on + strand, within PfGW456L13_2855at 3177.076 kb on + strand, within PfGW456L13_2855at 3177.076 kb on + strandat 3177.076 kb on + strand, within PfGW456L13_2855at 3177.076 kb on + strand, within PfGW456L13_2855at 3177.077 kb on - strand, within PfGW456L13_2855at 3177.077 kb on - strand, within PfGW456L13_2855at 3177.077 kb on - strand, within PfGW456L13_2855at 3177.283 kb on + strandat 3177.304 kb on + strandat 3177.304 kb on + strandat 3177.304 kb on + strandat 3177.304 kb on + strandat 3177.305 kb on - strandat 3177.305 kb on - strandat 3177.305 kb on - strandat 3177.305 kb on - strandat 3177.305 kb on - strandat 3177.458 kb on + strandat 3177.458 kb on + strandat 3177.472 kb on + strandat 3177.472 kb on + strandat 3177.472 kb on + strandat 3177.472 kb on + strandat 3177.472 kb on + strandat 3177.472 kb on + strandat 3177.472 kb on + strandat 3177.472 kb on + strandat 3177.473 kb on - strandat 3177.473 kb on - strandat 3177.473 kb on - strandat 3177.619 kb on + strandat 3177.619 kb on + strandat 3177.619 kb on + strandat 3177.619 kb on + strandat 3177.620 kb on - strandat 3177.903 kb on + strand, within PfGW456L13_2856at 3177.932 kb on + strand, within PfGW456L13_2856at 3177.932 kb on + strand, within PfGW456L13_2856at 3177.933 kb on - strand, within PfGW456L13_2856at 3177.933 kb on - strand, within PfGW456L13_2856at 3178.962 kb on + strand, within PfGW456L13_2857at 3178.963 kb on - strand, within PfGW456L13_2857at 3179.192 kb on + strand, within PfGW456L13_2857at 3179.303 kb on + strandat 3179.304 kb on - strandat 3179.554 kb on + strandat 3179.554 kb on + strandat 3179.599 kb on + strandat 3179.600 kb on - strandat 3179.600 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.03 mg/ml
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3,176,699 + PfGW456L13_2855 0.80 -0.9
3,176,866 + PfGW456L13_2855 0.84 +0.2
3,176,867 - PfGW456L13_2855 0.84 +0.4
3,176,867 - PfGW456L13_2855 0.84 -0.2
3,176,867 - PfGW456L13_2855 0.84 +0.2
3,176,951 + PfGW456L13_2855 0.86 +0.7
3,177,010 + -0.9
3,177,010 + PfGW456L13_2855 0.88 -3.3
3,177,011 - PfGW456L13_2855 0.88 -1.3
3,177,011 - PfGW456L13_2855 0.88 +0.6
3,177,011 - PfGW456L13_2855 0.88 +0.2
3,177,011 - PfGW456L13_2855 0.88 -0.9
3,177,011 - PfGW456L13_2855 0.88 +0.7
3,177,014 - PfGW456L13_2855 0.88 +0.4
3,177,076 + PfGW456L13_2855 0.90 -1.0
3,177,076 + PfGW456L13_2855 0.90 +0.4
3,177,076 + +0.7
3,177,076 + PfGW456L13_2855 0.90 +0.7
3,177,076 + PfGW456L13_2855 0.90 +0.4
3,177,077 - PfGW456L13_2855 0.90 +1.0
3,177,077 - PfGW456L13_2855 0.90 +1.1
3,177,077 - PfGW456L13_2855 0.90 +0.9
3,177,283 + +0.8
3,177,304 + +0.3
3,177,304 + -0.3
3,177,304 + +0.3
3,177,304 + -0.9
3,177,305 - +1.5
3,177,305 - +0.0
3,177,305 - -0.0
3,177,305 - +0.8
3,177,305 - -0.3
3,177,458 + -0.2
3,177,458 + -0.8
3,177,472 + +0.9
3,177,472 + -0.2
3,177,472 + -0.5
3,177,472 + +1.3
3,177,472 + +0.9
3,177,472 + -0.2
3,177,472 + +1.0
3,177,472 + -0.7
3,177,473 - -0.6
3,177,473 - -2.0
3,177,473 - -0.0
3,177,619 + -0.3
3,177,619 + -0.3
3,177,619 + +0.7
3,177,619 + +0.6
3,177,620 - -0.0
3,177,903 + PfGW456L13_2856 0.27 -0.9
3,177,932 + PfGW456L13_2856 0.30 -0.5
3,177,932 + PfGW456L13_2856 0.30 -1.8
3,177,933 - PfGW456L13_2856 0.30 -0.4
3,177,933 - PfGW456L13_2856 0.30 +0.1
3,178,962 + PfGW456L13_2857 0.38 +0.9
3,178,963 - PfGW456L13_2857 0.38 -1.9
3,179,192 + PfGW456L13_2857 0.80 +0.1
3,179,303 + +0.5
3,179,304 - +0.7
3,179,554 + +0.8
3,179,554 + +0.1
3,179,599 + -0.1
3,179,600 - -0.2
3,179,600 - +1.7

Or see this region's nucleotide sequence