Experiment: Fusidic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2855 and PfGW456L13_2856 are separated by 151 nucleotides PfGW456L13_2856 and PfGW456L13_2857 are separated by 119 nucleotides PfGW456L13_2857 and PfGW456L13_2858 are separated by 254 nucleotides
PfGW456L13_2855 - CobN component of cobalt chelatase involved in B12 biosynthesis, at 3,173,638 to 3,177,474
_2855
PfGW456L13_2856 - ChlI component of cobalt chelatase involved in B12 biosynthesis, at 3,177,626 to 3,178,633
_2856
PfGW456L13_2857 - ChlD component of cobalt chelatase involved in B12 biosynthesis, at 3,178,753 to 3,179,298
_2857
PfGW456L13_2858 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 3,179,553 to 3,180,776
_2858
Position (kb)
3177
3178
3179 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3176.699 kb on + strand, within PfGW456L13_2855 at 3176.866 kb on + strand, within PfGW456L13_2855 at 3176.867 kb on - strand, within PfGW456L13_2855 at 3176.867 kb on - strand, within PfGW456L13_2855 at 3176.867 kb on - strand, within PfGW456L13_2855 at 3176.951 kb on + strand, within PfGW456L13_2855 at 3177.010 kb on + strand at 3177.010 kb on + strand, within PfGW456L13_2855 at 3177.011 kb on - strand, within PfGW456L13_2855 at 3177.011 kb on - strand, within PfGW456L13_2855 at 3177.011 kb on - strand, within PfGW456L13_2855 at 3177.011 kb on - strand, within PfGW456L13_2855 at 3177.011 kb on - strand, within PfGW456L13_2855 at 3177.014 kb on - strand, within PfGW456L13_2855 at 3177.076 kb on + strand, within PfGW456L13_2855 at 3177.076 kb on + strand, within PfGW456L13_2855 at 3177.076 kb on + strand at 3177.076 kb on + strand, within PfGW456L13_2855 at 3177.076 kb on + strand, within PfGW456L13_2855 at 3177.077 kb on - strand, within PfGW456L13_2855 at 3177.077 kb on - strand, within PfGW456L13_2855 at 3177.077 kb on - strand, within PfGW456L13_2855 at 3177.283 kb on + strand at 3177.304 kb on + strand at 3177.304 kb on + strand at 3177.304 kb on + strand at 3177.304 kb on + strand at 3177.305 kb on - strand at 3177.305 kb on - strand at 3177.305 kb on - strand at 3177.305 kb on - strand at 3177.305 kb on - strand at 3177.458 kb on + strand at 3177.458 kb on + strand at 3177.472 kb on + strand at 3177.472 kb on + strand at 3177.472 kb on + strand at 3177.472 kb on + strand at 3177.472 kb on + strand at 3177.472 kb on + strand at 3177.472 kb on + strand at 3177.472 kb on + strand at 3177.473 kb on - strand at 3177.473 kb on - strand at 3177.473 kb on - strand at 3177.619 kb on + strand at 3177.619 kb on + strand at 3177.619 kb on + strand at 3177.619 kb on + strand at 3177.620 kb on - strand at 3177.903 kb on + strand, within PfGW456L13_2856 at 3177.932 kb on + strand, within PfGW456L13_2856 at 3177.932 kb on + strand, within PfGW456L13_2856 at 3177.933 kb on - strand, within PfGW456L13_2856 at 3177.933 kb on - strand, within PfGW456L13_2856 at 3178.962 kb on + strand, within PfGW456L13_2857 at 3178.963 kb on - strand, within PfGW456L13_2857 at 3179.192 kb on + strand, within PfGW456L13_2857 at 3179.303 kb on + strand at 3179.304 kb on - strand at 3179.554 kb on + strand at 3179.554 kb on + strand at 3179.599 kb on + strand at 3179.600 kb on - strand at 3179.600 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.03 mg/ml remove 3,176,699 + PfGW456L13_2855 0.80 -0.9 3,176,866 + PfGW456L13_2855 0.84 +0.2 3,176,867 - PfGW456L13_2855 0.84 +0.4 3,176,867 - PfGW456L13_2855 0.84 -0.2 3,176,867 - PfGW456L13_2855 0.84 +0.2 3,176,951 + PfGW456L13_2855 0.86 +0.7 3,177,010 + -0.9 3,177,010 + PfGW456L13_2855 0.88 -3.3 3,177,011 - PfGW456L13_2855 0.88 -1.3 3,177,011 - PfGW456L13_2855 0.88 +0.6 3,177,011 - PfGW456L13_2855 0.88 +0.2 3,177,011 - PfGW456L13_2855 0.88 -0.9 3,177,011 - PfGW456L13_2855 0.88 +0.7 3,177,014 - PfGW456L13_2855 0.88 +0.4 3,177,076 + PfGW456L13_2855 0.90 -1.0 3,177,076 + PfGW456L13_2855 0.90 +0.4 3,177,076 + +0.7 3,177,076 + PfGW456L13_2855 0.90 +0.7 3,177,076 + PfGW456L13_2855 0.90 +0.4 3,177,077 - PfGW456L13_2855 0.90 +1.0 3,177,077 - PfGW456L13_2855 0.90 +1.1 3,177,077 - PfGW456L13_2855 0.90 +0.9 3,177,283 + +0.8 3,177,304 + +0.3 3,177,304 + -0.3 3,177,304 + +0.3 3,177,304 + -0.9 3,177,305 - +1.5 3,177,305 - +0.0 3,177,305 - -0.0 3,177,305 - +0.8 3,177,305 - -0.3 3,177,458 + -0.2 3,177,458 + -0.8 3,177,472 + +0.9 3,177,472 + -0.2 3,177,472 + -0.5 3,177,472 + +1.3 3,177,472 + +0.9 3,177,472 + -0.2 3,177,472 + +1.0 3,177,472 + -0.7 3,177,473 - -0.6 3,177,473 - -2.0 3,177,473 - -0.0 3,177,619 + -0.3 3,177,619 + -0.3 3,177,619 + +0.7 3,177,619 + +0.6 3,177,620 - -0.0 3,177,903 + PfGW456L13_2856 0.27 -0.9 3,177,932 + PfGW456L13_2856 0.30 -0.5 3,177,932 + PfGW456L13_2856 0.30 -1.8 3,177,933 - PfGW456L13_2856 0.30 -0.4 3,177,933 - PfGW456L13_2856 0.30 +0.1 3,178,962 + PfGW456L13_2857 0.38 +0.9 3,178,963 - PfGW456L13_2857 0.38 -1.9 3,179,192 + PfGW456L13_2857 0.80 +0.1 3,179,303 + +0.5 3,179,304 - +0.7 3,179,554 + +0.8 3,179,554 + +0.1 3,179,599 + -0.1 3,179,600 - -0.2 3,179,600 - +1.7
Or see this region's nucleotide sequence