Experiment: Fusidic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2619 and PfGW456L13_2620 are separated by 820 nucleotides
PfGW456L13_2619 - hypothetical protein, at 2,914,702 to 2,914,836
_2619
PfGW456L13_2620 - Glutamine amidotransferase class-I (EC 6.3.5.2), at 2,915,657 to 2,915,968
_2620
Position (kb)
2915
2916 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2914.660 kb on - strand at 2914.660 kb on - strand at 2914.874 kb on - strand at 2914.946 kb on - strand at 2914.957 kb on + strand at 2915.046 kb on + strand at 2915.201 kb on + strand at 2915.207 kb on + strand at 2915.207 kb on + strand at 2915.207 kb on + strand at 2915.208 kb on - strand at 2915.208 kb on - strand at 2915.360 kb on + strand at 2915.361 kb on - strand at 2915.361 kb on - strand at 2915.377 kb on - strand at 2915.378 kb on + strand at 2915.378 kb on + strand at 2915.378 kb on + strand at 2915.378 kb on + strand at 2915.379 kb on - strand at 2915.379 kb on - strand at 2915.379 kb on - strand at 2915.379 kb on - strand at 2915.379 kb on - strand at 2915.379 kb on - strand at 2915.379 kb on - strand at 2915.379 kb on - strand at 2915.379 kb on - strand at 2915.393 kb on + strand at 2915.393 kb on + strand at 2915.393 kb on + strand at 2915.393 kb on + strand at 2915.394 kb on - strand at 2915.394 kb on - strand at 2915.394 kb on - strand at 2915.394 kb on - strand at 2915.511 kb on - strand at 2915.514 kb on + strand at 2915.514 kb on + strand at 2915.514 kb on + strand at 2915.515 kb on - strand at 2915.515 kb on - strand at 2915.515 kb on - strand at 2915.515 kb on - strand at 2915.658 kb on + strand at 2915.730 kb on - strand, within PfGW456L13_2620 at 2915.838 kb on - strand, within PfGW456L13_2620 at 2915.948 kb on + strand at 2916.133 kb on + strand at 2916.178 kb on - strand at 2916.275 kb on - strand at 2916.276 kb on + strand at 2916.277 kb on - strand at 2916.561 kb on + strand at 2916.562 kb on - strand at 2916.563 kb on + strand at 2916.563 kb on + strand at 2916.563 kb on + strand at 2916.669 kb on + strand at 2916.670 kb on - strand at 2916.670 kb on - strand at 2916.670 kb on - strand at 2916.676 kb on - strand at 2916.689 kb on - strand at 2916.815 kb on + strand at 2916.815 kb on + strand at 2916.816 kb on - strand at 2916.894 kb on + strand at 2916.895 kb on - strand at 2916.907 kb on + strand at 2916.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.03 mg/ml remove 2,914,660 - -0.0 2,914,660 - +0.6 2,914,874 - +1.5 2,914,946 - +0.8 2,914,957 + -0.9 2,915,046 + -0.2 2,915,201 + -0.0 2,915,207 + +0.8 2,915,207 + +0.0 2,915,207 + -0.3 2,915,208 - -0.8 2,915,208 - +0.8 2,915,360 + +0.8 2,915,361 - -0.9 2,915,361 - +0.0 2,915,377 - +0.6 2,915,378 + -0.2 2,915,378 + -0.2 2,915,378 + -0.7 2,915,378 + +1.0 2,915,379 - -0.1 2,915,379 - -0.2 2,915,379 - +0.8 2,915,379 - -0.2 2,915,379 - -0.4 2,915,379 - -0.1 2,915,379 - +1.5 2,915,379 - +0.2 2,915,379 - -0.8 2,915,393 + -0.0 2,915,393 + -1.0 2,915,393 + -1.2 2,915,393 + -0.2 2,915,394 - +0.5 2,915,394 - +0.5 2,915,394 - +0.4 2,915,394 - -0.6 2,915,511 - +0.2 2,915,514 + -0.3 2,915,514 + -0.6 2,915,514 + -3.1 2,915,515 - +0.8 2,915,515 - -0.9 2,915,515 - +0.1 2,915,515 - -0.7 2,915,658 + -1.4 2,915,730 - PfGW456L13_2620 0.23 -0.5 2,915,838 - PfGW456L13_2620 0.58 -0.2 2,915,948 + -0.6 2,916,133 + +0.3 2,916,178 - -1.1 2,916,275 - -0.4 2,916,276 + +0.8 2,916,277 - -0.8 2,916,561 + +1.2 2,916,562 - +0.2 2,916,563 + -1.8 2,916,563 + +0.5 2,916,563 + +0.2 2,916,669 + +0.6 2,916,670 - -0.7 2,916,670 - +0.0 2,916,670 - -1.4 2,916,676 - +1.0 2,916,689 - -0.9 2,916,815 + +0.8 2,916,815 + +0.7 2,916,816 - -1.0 2,916,894 + -0.1 2,916,895 - -0.7 2,916,907 + -0.4 2,916,908 - +0.9
Or see this region's nucleotide sequence