Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF873

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF871 and GFF872 are separated by 182 nucleotidesGFF872 and GFF873 are separated by 54 nucleotidesGFF873 and GFF874 are separated by 41 nucleotides GFF871 - Putative membrane protein, at 47,025 to 48,368 GFF871 GFF872 - Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11), at 48,551 to 49,189 GFF872 GFF873 - hypothetical protein, at 49,244 to 49,360 GFF873 GFF874 - Uncharacterized protein YtfM precursor, at 49,402 to 51,135 GFF874 Position (kb) 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 48.246 kb on - strandat 48.264 kb on + strandat 48.264 kb on + strandat 48.265 kb on - strandat 48.265 kb on - strandat 48.269 kb on + strandat 48.270 kb on - strandat 48.281 kb on + strandat 48.345 kb on + strandat 48.346 kb on - strandat 48.355 kb on - strandat 48.409 kb on + strandat 48.410 kb on - strandat 48.412 kb on - strandat 48.474 kb on + strandat 48.484 kb on + strandat 48.485 kb on - strandat 48.485 kb on - strandat 48.485 kb on - strandat 48.490 kb on - strandat 48.494 kb on + strandat 48.538 kb on + strandat 48.649 kb on - strand, within GFF872at 48.806 kb on - strand, within GFF872at 48.888 kb on + strand, within GFF872at 48.888 kb on + strand, within GFF872at 48.889 kb on - strand, within GFF872at 48.988 kb on + strand, within GFF872at 48.988 kb on + strand, within GFF872at 48.989 kb on - strand, within GFF872at 48.989 kb on - strand, within GFF872at 48.992 kb on + strand, within GFF872at 48.992 kb on + strand, within GFF872at 49.051 kb on - strand, within GFF872at 49.085 kb on - strand, within GFF872at 49.212 kb on - strandat 49.285 kb on - strand, within GFF873at 49.421 kb on + strandat 49.626 kb on - strand, within GFF874at 49.680 kb on - strand, within GFF874at 49.769 kb on - strand, within GFF874at 49.769 kb on - strand, within GFF874at 49.778 kb on + strand, within GFF874at 49.893 kb on + strand, within GFF874at 49.948 kb on + strand, within GFF874at 50.015 kb on - strand, within GFF874at 50.109 kb on + strand, within GFF874at 50.281 kb on + strand, within GFF874at 50.347 kb on - strand, within GFF874

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
remove
48,246 - +1.0
48,264 + -0.3
48,264 + -0.3
48,265 - +0.3
48,265 - -0.3
48,269 + -1.8
48,270 - +0.8
48,281 + -0.0
48,345 + -0.0
48,346 - -0.8
48,355 - -0.4
48,409 + +0.2
48,410 - +0.0
48,412 - +0.4
48,474 + -0.7
48,484 + -0.7
48,485 - -1.4
48,485 - -0.8
48,485 - +1.9
48,490 - -0.5
48,494 + -0.7
48,538 + +0.1
48,649 - GFF872 0.15 -0.4
48,806 - GFF872 0.40 -2.0
48,888 + GFF872 0.53 -0.1
48,888 + GFF872 0.53 -1.1
48,889 - GFF872 0.53 +0.3
48,988 + GFF872 0.68 -0.6
48,988 + GFF872 0.68 +0.2
48,989 - GFF872 0.69 +0.4
48,989 - GFF872 0.69 +0.2
48,992 + GFF872 0.69 -0.1
48,992 + GFF872 0.69 -2.0
49,051 - GFF872 0.78 -0.4
49,085 - GFF872 0.84 +0.2
49,212 - +0.2
49,285 - GFF873 0.35 -0.9
49,421 + +1.1
49,626 - GFF874 0.13 +1.7
49,680 - GFF874 0.16 -0.3
49,769 - GFF874 0.21 +0.9
49,769 - GFF874 0.21 -0.9
49,778 + GFF874 0.22 -0.5
49,893 + GFF874 0.28 +1.9
49,948 + GFF874 0.31 -0.8
50,015 - GFF874 0.35 +0.9
50,109 + GFF874 0.41 +0.8
50,281 + GFF874 0.51 +0.6
50,347 - GFF874 0.54 +0.5

Or see this region's nucleotide sequence