Experiment: LB_plus_SM_buffer with S16_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF704 and GFF705 overlap by 4 nucleotides GFF705 and GFF706 are separated by 143 nucleotides GFF706 and GFF707 are separated by 476 nucleotides
GFF704 - Glutamate transport ATP-binding protein, at 61,806 to 62,528
GFF704
GFF705 - Glutamate transport membrane-spanning protein, at 62,525 to 63,184
GFF705
GFF706 - Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2), at 63,328 to 64,074
GFF706
GFF707 - Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1), at 64,551 to 65,054
GFF707
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.384 kb on + strand, within GFF704 at 62.391 kb on - strand, within GFF704 at 62.391 kb on - strand, within GFF704 at 62.397 kb on + strand, within GFF704 at 62.401 kb on - strand, within GFF704 at 62.474 kb on + strand at 62.475 kb on - strand at 62.475 kb on - strand at 62.478 kb on + strand at 62.479 kb on - strand at 62.689 kb on + strand, within GFF705 at 62.714 kb on - strand, within GFF705 at 62.894 kb on - strand, within GFF705 at 63.184 kb on + strand at 63.212 kb on + strand at 63.371 kb on + strand at 63.571 kb on + strand, within GFF706 at 63.581 kb on + strand, within GFF706 at 63.708 kb on + strand, within GFF706 at 63.796 kb on - strand, within GFF706 at 63.801 kb on + strand, within GFF706 at 63.826 kb on - strand, within GFF706 at 63.907 kb on - strand, within GFF706 at 64.039 kb on - strand at 64.060 kb on + strand at 64.121 kb on - strand at 64.121 kb on - strand at 64.195 kb on - strand at 64.259 kb on + strand at 64.260 kb on - strand at 64.365 kb on + strand at 64.428 kb on + strand at 64.429 kb on - strand at 64.429 kb on - strand at 64.429 kb on - strand at 64.429 kb on - strand at 64.430 kb on + strand at 64.430 kb on + strand at 64.431 kb on - strand at 64.433 kb on - strand at 64.440 kb on + strand at 64.440 kb on + strand at 64.440 kb on + strand at 64.531 kb on + strand at 64.540 kb on + strand at 64.541 kb on - strand at 64.547 kb on - strand at 64.718 kb on + strand, within GFF707 at 64.718 kb on + strand, within GFF707 at 64.878 kb on - strand, within GFF707 at 65.035 kb on - strand at 65.062 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI remove 62,384 + GFF704 0.80 -0.7 62,391 - GFF704 0.81 -0.1 62,391 - GFF704 0.81 -2.4 62,397 + GFF704 0.82 +0.3 62,401 - GFF704 0.82 -0.6 62,474 + -0.2 62,475 - -1.0 62,475 - -0.7 62,478 + +0.2 62,479 - -0.4 62,689 + GFF705 0.25 +2.0 62,714 - GFF705 0.29 -1.6 62,894 - GFF705 0.56 +0.3 63,184 + +0.8 63,212 + +0.1 63,371 + +0.6 63,571 + GFF706 0.33 -0.4 63,581 + GFF706 0.34 -0.4 63,708 + GFF706 0.51 -2.5 63,796 - GFF706 0.63 +0.6 63,801 + GFF706 0.63 -1.0 63,826 - GFF706 0.67 -0.7 63,907 - GFF706 0.78 -0.8 64,039 - +1.2 64,060 + -0.5 64,121 - -0.6 64,121 - -0.1 64,195 - -2.3 64,259 + +1.4 64,260 - +0.7 64,365 + -0.0 64,428 + -1.7 64,429 - +0.3 64,429 - -0.7 64,429 - +0.9 64,429 - -0.3 64,430 + +0.0 64,430 + +1.9 64,431 - +0.2 64,433 - +0.2 64,440 + +0.1 64,440 + -0.4 64,440 + -0.7 64,531 + +1.9 64,540 + -1.0 64,541 - +0.7 64,547 - +0.0 64,718 + GFF707 0.33 -0.7 64,718 + GFF707 0.33 +0.2 64,878 - GFF707 0.65 +1.2 65,035 - -0.8 65,062 + -0.2
Or see this region's nucleotide sequence