Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF669

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF668 and GFF669 are separated by 84 nucleotidesGFF669 and GFF670 are separated by 57 nucleotides GFF668 - Histidine ammonia-lyase (EC 4.3.1.3), at 23,719 to 25,239 GFF668 GFF669 - UPF0098 protein ybhB, at 25,324 to 25,800 GFF669 GFF670 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 25,858 to 27,147 GFF670 Position (kb) 25 26Strain fitness (log2 ratio) -2 -1 0 1at 24.363 kb on - strand, within GFF668at 24.544 kb on - strand, within GFF668at 24.585 kb on - strand, within GFF668at 24.810 kb on + strand, within GFF668at 24.810 kb on + strand, within GFF668at 24.811 kb on - strand, within GFF668at 25.146 kb on + strandat 25.147 kb on - strandat 25.233 kb on + strandat 25.233 kb on + strandat 25.234 kb on - strandat 25.234 kb on - strandat 25.446 kb on + strand, within GFF669at 25.452 kb on + strand, within GFF669at 25.455 kb on - strand, within GFF669at 25.455 kb on - strand, within GFF669at 25.714 kb on - strand, within GFF669at 25.792 kb on - strandat 25.850 kb on - strandat 25.960 kb on + strandat 25.961 kb on - strandat 26.218 kb on - strand, within GFF670at 26.235 kb on + strand, within GFF670at 26.236 kb on - strand, within GFF670at 26.408 kb on - strand, within GFF670at 26.451 kb on + strand, within GFF670at 26.452 kb on - strand, within GFF670at 26.452 kb on - strand, within GFF670at 26.458 kb on - strand, within GFF670at 26.480 kb on + strand, within GFF670at 26.480 kb on + strand, within GFF670at 26.482 kb on + strand, within GFF670at 26.482 kb on + strand, within GFF670at 26.482 kb on + strand, within GFF670at 26.483 kb on - strand, within GFF670at 26.483 kb on - strand, within GFF670at 26.483 kb on - strand, within GFF670at 26.483 kb on - strand, within GFF670

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
remove
24,363 - GFF668 0.42 +0.3
24,544 - GFF668 0.54 +1.0
24,585 - GFF668 0.57 +0.7
24,810 + GFF668 0.72 -1.8
24,810 + GFF668 0.72 -0.8
24,811 - GFF668 0.72 -0.3
25,146 + -0.0
25,147 - -0.3
25,233 + -0.2
25,233 + -0.2
25,234 - -0.8
25,234 - -0.4
25,446 + GFF669 0.26 +0.3
25,452 + GFF669 0.27 -0.4
25,455 - GFF669 0.27 -0.6
25,455 - GFF669 0.27 -0.6
25,714 - GFF669 0.82 -1.2
25,792 - -0.6
25,850 - +0.3
25,960 + +0.4
25,961 - -0.1
26,218 - GFF670 0.28 -0.2
26,235 + GFF670 0.29 +0.2
26,236 - GFF670 0.29 +0.3
26,408 - GFF670 0.43 +0.7
26,451 + GFF670 0.46 -1.6
26,452 - GFF670 0.46 +0.9
26,452 - GFF670 0.46 +0.7
26,458 - GFF670 0.47 -0.5
26,480 + GFF670 0.48 -0.5
26,480 + GFF670 0.48 -1.1
26,482 + GFF670 0.48 +0.3
26,482 + GFF670 0.48 -0.2
26,482 + GFF670 0.48 -1.3
26,483 - GFF670 0.48 +0.4
26,483 - GFF670 0.48 -0.4
26,483 - GFF670 0.48 +0.7
26,483 - GFF670 0.48 +0.3

Or see this region's nucleotide sequence