Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF650

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF649 and GFF650 overlap by 7 nucleotidesGFF650 and GFF651 are separated by 2 nucleotides GFF649 - Aldose 1-epimerase (EC 5.1.3.3), at 4,403 to 5,443 GFF649 GFF650 - Galactokinase (EC 2.7.1.6), at 5,437 to 6,585 GFF650 GFF651 - Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10), at 6,588 to 7,634 GFF651 Position (kb) 5 6 7Strain fitness (log2 ratio) -3 -2 -1 0 1at 4.441 kb on - strandat 4.462 kb on + strandat 4.621 kb on - strand, within GFF649at 4.874 kb on - strand, within GFF649at 4.874 kb on - strand, within GFF649at 4.915 kb on - strand, within GFF649at 4.981 kb on + strand, within GFF649at 4.981 kb on + strand, within GFF649at 4.981 kb on + strand, within GFF649at 4.982 kb on - strand, within GFF649at 5.188 kb on + strand, within GFF649at 5.191 kb on - strand, within GFF649at 5.470 kb on + strandat 5.471 kb on - strandat 5.471 kb on - strandat 5.474 kb on + strandat 5.650 kb on + strand, within GFF650at 5.719 kb on - strand, within GFF650at 5.783 kb on - strand, within GFF650at 5.783 kb on - strand, within GFF650at 5.783 kb on - strand, within GFF650at 5.913 kb on + strand, within GFF650at 5.916 kb on + strand, within GFF650at 5.916 kb on + strand, within GFF650at 5.917 kb on - strand, within GFF650at 5.919 kb on - strand, within GFF650at 6.395 kb on - strand, within GFF650at 6.423 kb on + strand, within GFF650at 6.689 kb on - strandat 6.903 kb on - strand, within GFF651at 7.033 kb on + strand, within GFF651at 7.417 kb on + strand, within GFF651at 7.418 kb on - strand, within GFF651

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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4,441 - +0.3
4,462 + -1.8
4,621 - GFF649 0.21 -0.2
4,874 - GFF649 0.45 -0.3
4,874 - GFF649 0.45 +0.9
4,915 - GFF649 0.49 +0.2
4,981 + GFF649 0.56 +0.3
4,981 + GFF649 0.56 -0.9
4,981 + GFF649 0.56 -0.7
4,982 - GFF649 0.56 +1.7
5,188 + GFF649 0.75 -0.1
5,191 - GFF649 0.76 -0.9
5,470 + -0.6
5,471 - -0.5
5,471 - -0.7
5,474 + -1.2
5,650 + GFF650 0.19 -0.5
5,719 - GFF650 0.25 -0.2
5,783 - GFF650 0.30 -0.7
5,783 - GFF650 0.30 -0.4
5,783 - GFF650 0.30 -0.4
5,913 + GFF650 0.41 -3.0
5,916 + GFF650 0.42 +0.6
5,916 + GFF650 0.42 -0.5
5,917 - GFF650 0.42 -0.1
5,919 - GFF650 0.42 -1.1
6,395 - GFF650 0.83 +0.7
6,423 + GFF650 0.86 -0.2
6,689 - -0.9
6,903 - GFF651 0.30 +0.2
7,033 + GFF651 0.43 +0.0
7,417 + GFF651 0.79 -0.7
7,418 - GFF651 0.79 -1.2

Or see this region's nucleotide sequence