Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4559

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4558 and GFF4559 are separated by 49 nucleotidesGFF4559 and GFF4560 are separated by 67 nucleotides GFF4558 - Altronate hydrolase (EC 4.2.1.7), at 342,522 to 343,688 GFF4558 GFF4559 - 2-keto-3-deoxygluconate permease (KDG permease), at 343,738 to 344,691 GFF4559 GFF4560 - Propionate catabolism operon regulatory protein PrpR, at 344,759 to 346,687 GFF4560 Position (kb) 343 344 345Strain fitness (log2 ratio) -1 0 1at 342.818 kb on + strand, within GFF4558at 342.875 kb on + strand, within GFF4558at 342.876 kb on - strand, within GFF4558at 343.051 kb on + strand, within GFF4558at 343.286 kb on + strand, within GFF4558at 343.364 kb on + strand, within GFF4558at 343.642 kb on + strandat 343.667 kb on + strandat 343.841 kb on + strand, within GFF4559at 343.860 kb on + strand, within GFF4559at 344.040 kb on - strand, within GFF4559at 344.093 kb on + strand, within GFF4559at 344.094 kb on - strand, within GFF4559at 344.096 kb on - strand, within GFF4559at 344.096 kb on - strand, within GFF4559at 344.154 kb on - strand, within GFF4559at 344.244 kb on + strand, within GFF4559at 344.245 kb on - strand, within GFF4559at 344.556 kb on + strand, within GFF4559at 344.637 kb on - strandat 344.778 kb on + strandat 344.870 kb on - strandat 344.908 kb on - strandat 345.398 kb on - strand, within GFF4560at 345.597 kb on + strand, within GFF4560at 345.601 kb on + strand, within GFF4560at 345.616 kb on - strand, within GFF4560at 345.633 kb on + strand, within GFF4560

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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342,818 + GFF4558 0.25 +0.4
342,875 + GFF4558 0.30 -0.3
342,876 - GFF4558 0.30 -0.6
343,051 + GFF4558 0.45 +1.0
343,286 + GFF4558 0.65 -0.2
343,364 + GFF4558 0.72 -0.8
343,642 + -0.8
343,667 + +0.1
343,841 + GFF4559 0.11 -0.6
343,860 + GFF4559 0.13 +0.3
344,040 - GFF4559 0.32 -0.5
344,093 + GFF4559 0.37 -0.4
344,094 - GFF4559 0.37 -0.1
344,096 - GFF4559 0.38 -0.8
344,096 - GFF4559 0.38 -0.3
344,154 - GFF4559 0.44 -0.6
344,244 + GFF4559 0.53 -1.2
344,245 - GFF4559 0.53 -0.6
344,556 + GFF4559 0.86 -0.9
344,637 - -0.4
344,778 + -1.2
344,870 - -0.4
344,908 - -0.7
345,398 - GFF4560 0.33 -0.6
345,597 + GFF4560 0.43 +1.0
345,601 + GFF4560 0.44 -1.2
345,616 - GFF4560 0.44 +0.5
345,633 + GFF4560 0.45 +0.4

Or see this region's nucleotide sequence