Experiment: LB_plus_SM_buffer with S16_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF409 and GFF410 overlap by 4 nucleotides GFF410 and GFF411 overlap by 4 nucleotides
GFF409 - L-lactate dehydrogenase (EC 1.1.2.3), at 123,551 to 124,741
GFF409
GFF410 - Lactate-responsive regulator LldR in Enterobacteria, GntR family, at 124,738 to 125,514
GFF410
GFF411 - L-lactate permease, at 125,511 to 127,166
GFF411
Position (kb) 124
125
126 Strain fitness (log2 ratio) -1
0
1 at 123.748 kb on - strand, within GFF409 at 124.063 kb on + strand, within GFF409 at 124.113 kb on + strand, within GFF409 at 124.130 kb on + strand, within GFF409 at 124.174 kb on + strand, within GFF409 at 124.197 kb on + strand, within GFF409 at 124.491 kb on + strand, within GFF409 at 124.492 kb on - strand, within GFF409 at 124.492 kb on - strand, within GFF409 at 124.643 kb on - strand at 124.644 kb on + strand at 124.746 kb on + strand at 124.767 kb on + strand at 124.767 kb on + strand at 124.768 kb on - strand at 124.869 kb on + strand, within GFF410 at 124.958 kb on + strand, within GFF410 at 124.958 kb on + strand, within GFF410 at 124.959 kb on - strand, within GFF410 at 124.962 kb on + strand, within GFF410 at 124.962 kb on + strand, within GFF410 at 124.963 kb on - strand, within GFF410 at 124.963 kb on - strand, within GFF410 at 125.387 kb on - strand, within GFF410 at 125.549 kb on + strand at 125.567 kb on + strand at 125.567 kb on + strand at 125.568 kb on - strand at 125.568 kb on - strand at 125.757 kb on + strand, within GFF411 at 125.757 kb on + strand, within GFF411 at 125.897 kb on - strand, within GFF411 at 126.018 kb on - strand, within GFF411 at 126.076 kb on + strand, within GFF411 at 126.076 kb on + strand, within GFF411 at 126.077 kb on - strand, within GFF411 at 126.089 kb on - strand, within GFF411 at 126.159 kb on - strand, within GFF411 at 126.172 kb on + strand, within GFF411 at 126.173 kb on - strand, within GFF411 at 126.284 kb on + strand, within GFF411 at 126.285 kb on - strand, within GFF411 at 126.285 kb on - strand, within GFF411 at 126.285 kb on - strand, within GFF411
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI remove 123,748 - GFF409 0.17 -0.4 124,063 + GFF409 0.43 -1.0 124,113 + GFF409 0.47 -0.2 124,130 + GFF409 0.49 +0.5 124,174 + GFF409 0.52 +0.0 124,197 + GFF409 0.54 +0.0 124,491 + GFF409 0.79 -0.7 124,492 - GFF409 0.79 -0.1 124,492 - GFF409 0.79 -0.3 124,643 - -0.7 124,644 + -0.4 124,746 + +0.9 124,767 + -0.6 124,767 + -0.4 124,768 - -0.5 124,869 + GFF410 0.17 -1.1 124,958 + GFF410 0.28 -0.5 124,958 + GFF410 0.28 -0.9 124,959 - GFF410 0.28 +0.4 124,962 + GFF410 0.29 +0.7 124,962 + GFF410 0.29 +0.8 124,963 - GFF410 0.29 +0.1 124,963 - GFF410 0.29 +0.2 125,387 - GFF410 0.84 +0.7 125,549 + -0.7 125,567 + -0.1 125,567 + -0.6 125,568 - -0.3 125,568 - +1.4 125,757 + GFF411 0.15 -1.0 125,757 + GFF411 0.15 +0.5 125,897 - GFF411 0.23 +0.2 126,018 - GFF411 0.31 -0.5 126,076 + GFF411 0.34 -0.4 126,076 + GFF411 0.34 -0.6 126,077 - GFF411 0.34 -0.3 126,089 - GFF411 0.35 +0.3 126,159 - GFF411 0.39 -0.6 126,172 + GFF411 0.40 -0.3 126,173 - GFF411 0.40 -0.3 126,284 + GFF411 0.47 +0.0 126,285 - GFF411 0.47 -1.3 126,285 - GFF411 0.47 +1.2 126,285 - GFF411 0.47 +1.1
Or see this region's nucleotide sequence