Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3669

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3668 and GFF3669 are separated by 155 nucleotidesGFF3669 and GFF3670 are separated by 280 nucleotides GFF3668 - SSU ribosomal protein S1p, at 17,391 to 19,064 GFF3668 GFF3669 - Integration host factor beta subunit, at 19,220 to 19,504 GFF3669 GFF3670 - DNA internalization-related competence protein ComEC/Rec2, at 19,785 to 21,998 GFF3670 Position (kb) 19 20Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 19.109 kb on - strandat 19.136 kb on + strandat 19.315 kb on + strand, within GFF3669at 19.315 kb on + strand, within GFF3669at 19.562 kb on + strandat 19.763 kb on - strandat 19.766 kb on - strandat 19.789 kb on + strandat 19.799 kb on - strandat 19.808 kb on + strandat 19.888 kb on + strandat 20.004 kb on - strandat 20.086 kb on - strand, within GFF3670at 20.160 kb on - strand, within GFF3670at 20.271 kb on + strand, within GFF3670

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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19,109 - +0.3
19,136 + +1.5
19,315 + GFF3669 0.33 +3.3
19,315 + GFF3669 0.33 +3.1
19,562 + -0.4
19,763 - -0.3
19,766 - -1.2
19,789 + +0.1
19,799 - +0.1
19,808 + -3.0
19,888 + -1.5
20,004 - -2.2
20,086 - GFF3670 0.14 -0.8
20,160 - GFF3670 0.17 +0.7
20,271 + GFF3670 0.22 +1.6

Or see this region's nucleotide sequence