Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3496

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3495 and GFF3496 overlap by 8 nucleotidesGFF3496 and GFF3497 are separated by 335 nucleotidesGFF3497 and GFF3498 are separated by 74 nucleotides GFF3495 - Succinylarginine dihydrolase (EC 3.5.3.23), at 247,970 to 249,313 GFF3495 GFF3496 - Succinylglutamate desuccinylase (EC 3.5.1.96), at 249,306 to 250,274 GFF3496 GFF3497 - Periplasmic protein related to spheroblast formation, at 250,610 to 251,095 GFF3497 GFF3498 - Excinuclease cho (excinuclease ABC alternative C subunit), at 251,170 to 252,078 GFF3498 Position (kb) 249 250 251Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 248.365 kb on - strand, within GFF3495at 248.425 kb on - strand, within GFF3495at 248.877 kb on - strand, within GFF3495at 248.884 kb on + strand, within GFF3495at 248.925 kb on + strand, within GFF3495at 249.038 kb on - strand, within GFF3495at 249.171 kb on - strand, within GFF3495at 249.173 kb on + strand, within GFF3495at 249.331 kb on + strandat 249.442 kb on + strand, within GFF3496at 249.686 kb on - strand, within GFF3496at 249.926 kb on + strand, within GFF3496at 249.985 kb on + strand, within GFF3496at 250.104 kb on + strand, within GFF3496at 250.104 kb on + strand, within GFF3496at 250.105 kb on - strand, within GFF3496at 250.105 kb on - strand, within GFF3496at 250.105 kb on - strand, within GFF3496at 250.106 kb on + strand, within GFF3496at 250.276 kb on - strandat 250.305 kb on - strandat 250.629 kb on + strandat 250.730 kb on - strand, within GFF3497at 250.813 kb on + strand, within GFF3497at 250.967 kb on - strand, within GFF3497at 251.023 kb on + strand, within GFF3497at 251.210 kb on + strandat 251.224 kb on + strandat 251.244 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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248,365 - GFF3495 0.29 -0.5
248,425 - GFF3495 0.34 +0.2
248,877 - GFF3495 0.67 +0.2
248,884 + GFF3495 0.68 +0.2
248,925 + GFF3495 0.71 -1.8
249,038 - GFF3495 0.79 +0.2
249,171 - GFF3495 0.89 -3.2
249,173 + GFF3495 0.90 -1.2
249,331 + -2.1
249,442 + GFF3496 0.14 -0.5
249,686 - GFF3496 0.39 -0.9
249,926 + GFF3496 0.64 +0.3
249,985 + GFF3496 0.70 -1.4
250,104 + GFF3496 0.82 -1.5
250,104 + GFF3496 0.82 +0.9
250,105 - GFF3496 0.82 -0.5
250,105 - GFF3496 0.82 -0.5
250,105 - GFF3496 0.82 -0.8
250,106 + GFF3496 0.83 -0.5
250,276 - -2.3
250,305 - +0.5
250,629 + +1.8
250,730 - GFF3497 0.25 +0.3
250,813 + GFF3497 0.42 +0.0
250,967 - GFF3497 0.73 +0.1
251,023 + GFF3497 0.85 -0.9
251,210 + +1.7
251,224 + -0.6
251,244 + +1.1

Or see this region's nucleotide sequence