Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF334

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF332 and GFF333 are separated by 7 nucleotidesGFF333 and GFF334 are separated by 98 nucleotidesGFF334 and GFF335 are separated by 266 nucleotides GFF332 - Mg(2+) transport ATPase protein C, at 47,913 to 48,590 GFF332 GFF333 - hypothetical protein, at 48,598 to 48,711 GFF333 GFF334 - Mg(2+) transport ATPase, P-type (EC 3.6.3.2), at 48,810 to 51,536 GFF334 GFF335 - Putative inner membrane protein, at 51,803 to 52,330 GFF335 Position (kb) 48 49 50 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 47.869 kb on - strandat 47.993 kb on + strand, within GFF332at 47.993 kb on + strand, within GFF332at 47.994 kb on - strand, within GFF332at 48.302 kb on - strand, within GFF332at 48.341 kb on + strand, within GFF332at 48.436 kb on + strand, within GFF332at 48.437 kb on - strand, within GFF332at 48.626 kb on + strand, within GFF333at 48.964 kb on + strandat 49.075 kb on - strandat 49.199 kb on - strand, within GFF334at 49.226 kb on + strand, within GFF334at 49.437 kb on - strand, within GFF334at 49.472 kb on + strand, within GFF334at 49.490 kb on + strand, within GFF334at 49.567 kb on + strand, within GFF334at 49.713 kb on - strand, within GFF334at 49.960 kb on + strand, within GFF334at 49.974 kb on - strand, within GFF334at 50.008 kb on + strand, within GFF334at 50.048 kb on + strand, within GFF334at 50.048 kb on + strand, within GFF334at 50.049 kb on - strand, within GFF334at 50.170 kb on + strand, within GFF334at 50.261 kb on - strand, within GFF334at 50.261 kb on - strand, within GFF334at 50.344 kb on - strand, within GFF334at 50.365 kb on + strand, within GFF334at 50.384 kb on + strand, within GFF334at 50.384 kb on + strand, within GFF334at 50.384 kb on + strand, within GFF334at 50.384 kb on + strand, within GFF334at 50.385 kb on - strand, within GFF334at 50.416 kb on + strand, within GFF334at 50.442 kb on - strand, within GFF334at 50.847 kb on - strand, within GFF334at 50.850 kb on - strand, within GFF334at 50.924 kb on + strand, within GFF334at 50.925 kb on - strand, within GFF334at 51.045 kb on + strand, within GFF334at 51.141 kb on - strand, within GFF334at 51.294 kb on - strandat 51.320 kb on + strandat 51.349 kb on + strandat 51.384 kb on + strandat 51.384 kb on + strandat 51.386 kb on + strandat 51.475 kb on - strandat 51.535 kb on - strandat 51.592 kb on + strandat 51.625 kb on + strandat 51.626 kb on - strandat 51.778 kb on - strandat 51.896 kb on - strand, within GFF335at 52.000 kb on + strand, within GFF335at 52.073 kb on - strand, within GFF335at 52.073 kb on - strand, within GFF335at 52.076 kb on + strand, within GFF335at 52.076 kb on + strand, within GFF335at 52.076 kb on + strand, within GFF335at 52.077 kb on - strand, within GFF335at 52.077 kb on - strand, within GFF335at 52.122 kb on - strand, within GFF335at 52.131 kb on + strand, within GFF335at 52.131 kb on + strand, within GFF335at 52.211 kb on - strand, within GFF335at 52.211 kb on - strand, within GFF335at 52.225 kb on - strand, within GFF335at 52.242 kb on - strand, within GFF335at 52.265 kb on - strand, within GFF335at 52.329 kb on - strandat 52.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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47,869 - +0.2
47,993 + GFF332 0.12 +0.6
47,993 + GFF332 0.12 +0.7
47,994 - GFF332 0.12 +0.1
48,302 - GFF332 0.57 -0.2
48,341 + GFF332 0.63 +0.9
48,436 + GFF332 0.77 +0.4
48,437 - GFF332 0.77 +0.7
48,626 + GFF333 0.25 +0.5
48,964 + -1.3
49,075 - +0.0
49,199 - GFF334 0.14 -1.0
49,226 + GFF334 0.15 -1.3
49,437 - GFF334 0.23 -0.7
49,472 + GFF334 0.24 -0.1
49,490 + GFF334 0.25 +0.3
49,567 + GFF334 0.28 -0.0
49,713 - GFF334 0.33 +1.4
49,960 + GFF334 0.42 +0.1
49,974 - GFF334 0.43 -1.2
50,008 + GFF334 0.44 -0.1
50,048 + GFF334 0.45 +0.1
50,048 + GFF334 0.45 +0.1
50,049 - GFF334 0.45 +1.1
50,170 + GFF334 0.50 -0.3
50,261 - GFF334 0.53 -0.5
50,261 - GFF334 0.53 -2.2
50,344 - GFF334 0.56 -0.9
50,365 + GFF334 0.57 -0.6
50,384 + GFF334 0.58 -0.6
50,384 + GFF334 0.58 -0.6
50,384 + GFF334 0.58 +0.6
50,384 + GFF334 0.58 -0.2
50,385 - GFF334 0.58 -0.1
50,416 + GFF334 0.59 +0.1
50,442 - GFF334 0.60 -0.4
50,847 - GFF334 0.75 -1.7
50,850 - GFF334 0.75 -0.2
50,924 + GFF334 0.78 +0.2
50,925 - GFF334 0.78 +0.1
51,045 + GFF334 0.82 -0.4
51,141 - GFF334 0.85 +0.0
51,294 - -1.4
51,320 + -0.8
51,349 + +1.5
51,384 + +1.4
51,384 + -0.1
51,386 + +1.1
51,475 - -2.6
51,535 - -0.2
51,592 + -1.0
51,625 + +0.3
51,626 - +0.0
51,778 - -0.8
51,896 - GFF335 0.18 +0.4
52,000 + GFF335 0.37 +0.1
52,073 - GFF335 0.51 +0.3
52,073 - GFF335 0.51 -1.0
52,076 + GFF335 0.52 +0.5
52,076 + GFF335 0.52 -0.3
52,076 + GFF335 0.52 -0.4
52,077 - GFF335 0.52 -0.4
52,077 - GFF335 0.52 -2.9
52,122 - GFF335 0.60 -0.5
52,131 + GFF335 0.62 +0.1
52,131 + GFF335 0.62 -1.0
52,211 - GFF335 0.77 +0.7
52,211 - GFF335 0.77 +1.9
52,225 - GFF335 0.80 +0.1
52,242 - GFF335 0.83 -1.7
52,265 - GFF335 0.88 -0.8
52,329 - +0.5
52,526 - -0.0

Or see this region's nucleotide sequence