Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3118

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3116 and GFF3117 are separated by 112 nucleotidesGFF3117 and GFF3118 are separated by 6 nucleotidesGFF3118 and GFF3119 overlap by 8 nucleotidesGFF3119 and GFF3120 are separated by 121 nucleotides GFF3116 - FIG00553873: hypothetical protein, at 123,715 to 124,599 GFF3116 GFF3117 - Biopolymer transport protein ExbD/TolR, at 124,712 to 125,137 GFF3117 GFF3118 - MotA/TolQ/ExbB proton channel family protein, at 125,144 to 125,878 GFF3118 GFF3119 - hypothetical protein, at 125,871 to 126,008 GFF3119 GFF3120 - Cystathionine beta-lyase (EC 4.4.1.8), at 126,130 to 127,317 GFF3120 Position (kb) 125 126Strain fitness (log2 ratio) -2 -1 0 1at 124.149 kb on - strand, within GFF3116at 124.272 kb on + strand, within GFF3116at 124.339 kb on + strand, within GFF3116at 124.340 kb on - strand, within GFF3116at 124.519 kb on + strandat 124.520 kb on - strandat 124.520 kb on - strandat 124.520 kb on - strandat 124.525 kb on + strandat 124.525 kb on + strandat 124.526 kb on - strandat 124.549 kb on + strandat 124.550 kb on - strandat 124.593 kb on - strandat 124.615 kb on - strandat 124.869 kb on - strand, within GFF3117at 124.912 kb on + strand, within GFF3117at 124.945 kb on - strand, within GFF3117at 124.981 kb on + strand, within GFF3117at 125.175 kb on - strandat 125.232 kb on - strand, within GFF3118at 125.265 kb on + strand, within GFF3118at 125.266 kb on - strand, within GFF3118at 125.359 kb on + strand, within GFF3118at 125.423 kb on - strand, within GFF3118at 125.570 kb on - strand, within GFF3118at 125.570 kb on - strand, within GFF3118at 125.715 kb on - strand, within GFF3118at 125.833 kb on - strandat 125.869 kb on + strandat 125.916 kb on + strand, within GFF3119at 125.917 kb on - strand, within GFF3119at 125.917 kb on - strand, within GFF3119at 125.917 kb on - strand, within GFF3119at 125.920 kb on - strand, within GFF3119at 125.920 kb on - strand, within GFF3119at 125.920 kb on - strand, within GFF3119at 125.960 kb on + strand, within GFF3119at 125.960 kb on + strand, within GFF3119at 125.968 kb on + strand, within GFF3119at 125.982 kb on + strand, within GFF3119at 126.029 kb on - strandat 126.079 kb on + strandat 126.081 kb on + strandat 126.091 kb on - strandat 126.091 kb on - strandat 126.204 kb on + strandat 126.204 kb on + strandat 126.460 kb on + strand, within GFF3120at 126.558 kb on + strand, within GFF3120at 126.581 kb on + strand, within GFF3120at 126.687 kb on + strand, within GFF3120at 126.735 kb on + strand, within GFF3120at 126.735 kb on + strand, within GFF3120at 126.877 kb on + strand, within GFF3120at 126.878 kb on - strand, within GFF3120at 126.878 kb on - strand, within GFF3120at 126.878 kb on - strand, within GFF3120

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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124,149 - GFF3116 0.49 +1.0
124,272 + GFF3116 0.63 +0.1
124,339 + GFF3116 0.71 -0.6
124,340 - GFF3116 0.71 +0.0
124,519 + +0.8
124,520 - +0.4
124,520 - -0.5
124,520 - -0.3
124,525 + -0.9
124,525 + +0.2
124,526 - -0.2
124,549 + +0.9
124,550 - +0.9
124,593 - -2.2
124,615 - -2.6
124,869 - GFF3117 0.37 -0.6
124,912 + GFF3117 0.47 -0.9
124,945 - GFF3117 0.55 -0.0
124,981 + GFF3117 0.63 -0.6
125,175 - -0.5
125,232 - GFF3118 0.12 -0.8
125,265 + GFF3118 0.16 -1.6
125,266 - GFF3118 0.17 -0.1
125,359 + GFF3118 0.29 -0.1
125,423 - GFF3118 0.38 -2.7
125,570 - GFF3118 0.58 -1.0
125,570 - GFF3118 0.58 +0.0
125,715 - GFF3118 0.78 +0.7
125,833 - -0.4
125,869 + -0.9
125,916 + GFF3119 0.33 -0.1
125,917 - GFF3119 0.33 -0.2
125,917 - GFF3119 0.33 +0.2
125,917 - GFF3119 0.33 -0.5
125,920 - GFF3119 0.36 -0.7
125,920 - GFF3119 0.36 -0.3
125,920 - GFF3119 0.36 -2.6
125,960 + GFF3119 0.64 -0.3
125,960 + GFF3119 0.64 -0.1
125,968 + GFF3119 0.70 -1.2
125,982 + GFF3119 0.80 +0.0
126,029 - +0.6
126,079 + -0.8
126,081 + +0.2
126,091 - +0.6
126,091 - +0.4
126,204 + -1.9
126,204 + +0.0
126,460 + GFF3120 0.28 +0.3
126,558 + GFF3120 0.36 -0.1
126,581 + GFF3120 0.38 -0.7
126,687 + GFF3120 0.47 -0.5
126,735 + GFF3120 0.51 -0.8
126,735 + GFF3120 0.51 -0.2
126,877 + GFF3120 0.63 -0.5
126,878 - GFF3120 0.63 -0.0
126,878 - GFF3120 0.63 +0.1
126,878 - GFF3120 0.63 -0.5

Or see this region's nucleotide sequence