Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3093

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3092 and GFF3093 are separated by 404 nucleotidesGFF3093 and GFF3094 are separated by 110 nucleotides GFF3092 - Hexuronate transporter, at 99,554 to 100,858 GFF3092 GFF3093 - Mannonate dehydratase (EC 4.2.1.8), at 101,263 to 102,447 GFF3093 GFF3094 - D-mannonate oxidoreductase (EC 1.1.1.57), at 102,558 to 104,030 GFF3094 Position (kb) 101 102 103Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 100.293 kb on + strand, within GFF3092at 100.373 kb on - strand, within GFF3092at 100.566 kb on - strand, within GFF3092at 100.625 kb on - strand, within GFF3092at 100.663 kb on - strand, within GFF3092at 100.775 kb on - strandat 100.794 kb on + strandat 100.795 kb on - strandat 100.861 kb on + strandat 100.996 kb on + strandat 101.263 kb on - strandat 101.292 kb on + strandat 101.456 kb on + strand, within GFF3093at 101.456 kb on + strand, within GFF3093at 101.456 kb on + strand, within GFF3093at 101.456 kb on + strand, within GFF3093at 101.457 kb on - strand, within GFF3093at 101.532 kb on + strand, within GFF3093at 101.533 kb on - strand, within GFF3093at 101.551 kb on - strand, within GFF3093at 101.555 kb on - strand, within GFF3093at 101.556 kb on + strand, within GFF3093at 101.568 kb on + strand, within GFF3093at 101.574 kb on + strand, within GFF3093at 101.599 kb on - strand, within GFF3093at 101.599 kb on - strand, within GFF3093at 101.611 kb on + strand, within GFF3093at 101.611 kb on + strand, within GFF3093at 101.611 kb on + strand, within GFF3093at 101.611 kb on + strand, within GFF3093at 101.615 kb on + strand, within GFF3093at 101.616 kb on - strand, within GFF3093at 101.616 kb on - strand, within GFF3093at 101.616 kb on - strand, within GFF3093at 101.710 kb on + strand, within GFF3093at 101.713 kb on - strand, within GFF3093at 101.824 kb on + strand, within GFF3093at 101.827 kb on - strand, within GFF3093at 101.827 kb on - strand, within GFF3093at 101.860 kb on + strand, within GFF3093at 101.863 kb on - strand, within GFF3093at 101.868 kb on + strand, within GFF3093at 102.048 kb on + strand, within GFF3093at 102.048 kb on + strand, within GFF3093at 102.049 kb on - strand, within GFF3093at 102.049 kb on - strand, within GFF3093at 102.117 kb on + strand, within GFF3093at 102.117 kb on + strand, within GFF3093at 102.145 kb on + strand, within GFF3093at 102.146 kb on - strand, within GFF3093at 102.150 kb on + strand, within GFF3093at 102.228 kb on + strand, within GFF3093at 102.228 kb on + strand, within GFF3093at 102.228 kb on + strand, within GFF3093at 102.228 kb on + strand, within GFF3093at 102.229 kb on - strand, within GFF3093at 102.232 kb on + strand, within GFF3093at 102.232 kb on + strand, within GFF3093at 102.232 kb on + strand, within GFF3093at 102.232 kb on + strand, within GFF3093at 102.233 kb on - strand, within GFF3093at 102.233 kb on - strand, within GFF3093at 102.233 kb on - strand, within GFF3093at 102.233 kb on - strand, within GFF3093at 102.233 kb on - strand, within GFF3093at 102.488 kb on - strandat 102.500 kb on - strandat 102.633 kb on - strandat 102.633 kb on - strandat 102.795 kb on + strand, within GFF3094at 102.795 kb on + strand, within GFF3094at 103.066 kb on + strand, within GFF3094at 103.271 kb on - strand, within GFF3094at 103.271 kb on - strand, within GFF3094at 103.300 kb on - strand, within GFF3094

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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100,293 + GFF3092 0.57 -0.2
100,373 - GFF3092 0.63 -0.3
100,566 - GFF3092 0.78 -0.2
100,625 - GFF3092 0.82 -0.0
100,663 - GFF3092 0.85 -0.4
100,775 - +0.7
100,794 + +0.5
100,795 - +1.4
100,861 + -0.4
100,996 + +1.1
101,263 - -0.0
101,292 + +0.4
101,456 + GFF3093 0.16 -0.0
101,456 + GFF3093 0.16 -0.1
101,456 + GFF3093 0.16 +0.3
101,456 + GFF3093 0.16 -0.1
101,457 - GFF3093 0.16 -1.0
101,532 + GFF3093 0.23 -0.4
101,533 - GFF3093 0.23 -0.6
101,551 - GFF3093 0.24 +0.1
101,555 - GFF3093 0.25 -0.1
101,556 + GFF3093 0.25 -0.2
101,568 + GFF3093 0.26 -1.0
101,574 + GFF3093 0.26 +0.7
101,599 - GFF3093 0.28 +0.0
101,599 - GFF3093 0.28 -0.7
101,611 + GFF3093 0.29 -1.2
101,611 + GFF3093 0.29 -1.2
101,611 + GFF3093 0.29 -0.6
101,611 + GFF3093 0.29 -0.1
101,615 + GFF3093 0.30 +0.3
101,616 - GFF3093 0.30 -0.1
101,616 - GFF3093 0.30 -0.2
101,616 - GFF3093 0.30 -1.0
101,710 + GFF3093 0.38 +0.5
101,713 - GFF3093 0.38 +0.0
101,824 + GFF3093 0.47 +0.1
101,827 - GFF3093 0.48 -0.3
101,827 - GFF3093 0.48 -3.2
101,860 + GFF3093 0.50 -0.8
101,863 - GFF3093 0.51 +2.7
101,868 + GFF3093 0.51 -0.3
102,048 + GFF3093 0.66 -0.4
102,048 + GFF3093 0.66 +0.1
102,049 - GFF3093 0.66 -0.3
102,049 - GFF3093 0.66 +0.6
102,117 + GFF3093 0.72 -0.9
102,117 + GFF3093 0.72 +1.1
102,145 + GFF3093 0.74 +0.1
102,146 - GFF3093 0.75 -0.6
102,150 + GFF3093 0.75 -1.6
102,228 + GFF3093 0.81 -1.2
102,228 + GFF3093 0.81 -0.0
102,228 + GFF3093 0.81 -1.2
102,228 + GFF3093 0.81 +0.1
102,229 - GFF3093 0.82 -0.6
102,232 + GFF3093 0.82 -0.8
102,232 + GFF3093 0.82 -0.4
102,232 + GFF3093 0.82 +0.2
102,232 + GFF3093 0.82 -1.6
102,233 - GFF3093 0.82 -3.4
102,233 - GFF3093 0.82 -0.8
102,233 - GFF3093 0.82 +0.0
102,233 - GFF3093 0.82 +1.3
102,233 - GFF3093 0.82 -0.6
102,488 - -0.7
102,500 - +0.3
102,633 - -0.2
102,633 - -0.7
102,795 + GFF3094 0.16 +0.1
102,795 + GFF3094 0.16 -0.0
103,066 + GFF3094 0.34 +0.4
103,271 - GFF3094 0.48 +0.6
103,271 - GFF3094 0.48 +0.3
103,300 - GFF3094 0.50 -0.8

Or see this region's nucleotide sequence