Experiment: LB_plus_SM_buffer with S16_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2764 and GFF2765 overlap by 8 nucleotides GFF2765 and GFF2766 are separated by 0 nucleotides GFF2766 and GFF2767 are separated by 176 nucleotides GFF2767 and GFF2768 are separated by 79 nucleotides
GFF2764 - Nitrate/nitrite sensor protein (EC 2.7.3.-), at 289,551 to 291,347
GFF2764
GFF2765 - Nitrate/nitrite response regulator protein, at 291,340 to 291,990
GFF2765
GFF2766 - Invasin, at 291,991 to 293,415
GFF2766
GFF2767 - Putative ACR protein, at 293,592 to 293,945
GFF2767
GFF2768 - Cation transport regulator chaB, at 294,025 to 294,255
GFF2768
Position (kb) 291
292
293
294 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 291.300 kb on - strand at 291.335 kb on + strand at 291.585 kb on + strand, within GFF2765 at 291.656 kb on - strand, within GFF2765 at 291.728 kb on + strand, within GFF2765 at 291.728 kb on + strand, within GFF2765 at 291.825 kb on + strand, within GFF2765 at 291.919 kb on - strand, within GFF2765 at 291.992 kb on + strand at 291.992 kb on + strand at 292.479 kb on + strand, within GFF2766 at 292.480 kb on - strand, within GFF2766 at 292.555 kb on + strand, within GFF2766 at 292.565 kb on + strand, within GFF2766 at 292.583 kb on - strand, within GFF2766 at 292.679 kb on + strand, within GFF2766 at 292.735 kb on + strand, within GFF2766 at 292.779 kb on - strand, within GFF2766 at 292.799 kb on + strand, within GFF2766 at 292.862 kb on + strand, within GFF2766 at 292.873 kb on - strand, within GFF2766 at 292.976 kb on + strand, within GFF2766 at 293.049 kb on + strand, within GFF2766 at 293.365 kb on - strand at 293.429 kb on - strand at 293.588 kb on - strand at 293.649 kb on - strand, within GFF2767 at 293.649 kb on - strand, within GFF2767 at 293.771 kb on + strand, within GFF2767 at 294.168 kb on + strand, within GFF2768
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI remove 291,300 - -0.5 291,335 + +2.0 291,585 + GFF2765 0.38 -1.5 291,656 - GFF2765 0.49 +3.9 291,728 + GFF2765 0.60 +1.9 291,728 + GFF2765 0.60 -0.7 291,825 + GFF2765 0.75 -1.2 291,919 - GFF2765 0.89 -0.2 291,992 + -0.2 291,992 + -0.1 292,479 + GFF2766 0.34 +0.7 292,480 - GFF2766 0.34 +0.5 292,555 + GFF2766 0.40 -0.3 292,565 + GFF2766 0.40 +2.1 292,583 - GFF2766 0.42 +1.9 292,679 + GFF2766 0.48 +1.5 292,735 + GFF2766 0.52 +0.4 292,779 - GFF2766 0.55 +0.5 292,799 + GFF2766 0.57 +1.9 292,862 + GFF2766 0.61 +0.3 292,873 - GFF2766 0.62 -0.6 292,976 + GFF2766 0.69 +0.9 293,049 + GFF2766 0.74 -0.1 293,365 - -1.2 293,429 - +0.7 293,588 - +0.7 293,649 - GFF2767 0.16 +1.0 293,649 - GFF2767 0.16 +0.6 293,771 + GFF2767 0.51 +0.1 294,168 + GFF2768 0.62 +0.1
Or see this region's nucleotide sequence