Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2010

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2009 and GFF2010 are separated by 43 nucleotidesGFF2010 and GFF2011 are separated by 254 nucleotides GFF2009 - Heat shock protein 60 family chaperone GroEL, at 19,717 to 21,363 GFF2009 GFF2010 - Heat shock protein 60 family co-chaperone GroES, at 21,407 to 21,700 GFF2010 GFF2011 - Putative permease, at 21,955 to 23,217 GFF2011 Position (kb) 21 22Strain fitness (log2 ratio) -1 0 1at 21.386 kb on - strandat 21.735 kb on - strandat 21.754 kb on - strandat 21.864 kb on - strandat 21.874 kb on + strandat 21.898 kb on + strandat 21.898 kb on + strandat 21.899 kb on - strandat 22.344 kb on - strand, within GFF2011at 22.359 kb on + strand, within GFF2011at 22.365 kb on - strand, within GFF2011at 22.371 kb on - strand, within GFF2011at 22.373 kb on + strand, within GFF2011at 22.374 kb on - strand, within GFF2011at 22.436 kb on + strand, within GFF2011

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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21,386 - -0.7
21,735 - +0.7
21,754 - +0.5
21,864 - +0.1
21,874 + -0.2
21,898 + -0.2
21,898 + -0.7
21,899 - +0.2
22,344 - GFF2011 0.31 +1.3
22,359 + GFF2011 0.32 -1.2
22,365 - GFF2011 0.32 +0.4
22,371 - GFF2011 0.33 -0.6
22,373 + GFF2011 0.33 -0.0
22,374 - GFF2011 0.33 +0.3
22,436 + GFF2011 0.38 -0.7

Or see this region's nucleotide sequence