Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1810

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1809 and GFF1810 are separated by 188 nucleotidesGFF1810 and GFF1811 are separated by 365 nucleotides GFF1809 - Putative GTP-binding protein YdgA, at 33,076 to 34,584 GFF1809 GFF1810 - FIG01046382: hypothetical protein, at 34,773 to 34,922 GFF1810 GFF1811 - Adenosine deaminase (EC 3.5.4.4), at 35,288 to 36,289 GFF1811 Position (kb) 34 35Strain fitness (log2 ratio) -1 0 1at 34.447 kb on - strandat 34.447 kb on - strandat 34.469 kb on - strandat 34.644 kb on - strandat 34.825 kb on + strand, within GFF1810at 34.852 kb on + strand, within GFF1810at 34.852 kb on + strand, within GFF1810at 34.920 kb on + strandat 34.980 kb on + strandat 35.031 kb on - strandat 35.102 kb on - strandat 35.247 kb on - strandat 35.251 kb on + strandat 35.296 kb on + strandat 35.299 kb on + strandat 35.299 kb on + strandat 35.713 kb on + strand, within GFF1811at 35.737 kb on - strand, within GFF1811at 35.737 kb on - strand, within GFF1811at 35.867 kb on - strand, within GFF1811

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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34,447 - +0.6
34,447 - -1.3
34,469 - +0.5
34,644 - -1.6
34,825 + GFF1810 0.35 -0.2
34,852 + GFF1810 0.53 -1.5
34,852 + GFF1810 0.53 -0.2
34,920 + -0.7
34,980 + -0.1
35,031 - -0.9
35,102 - +0.1
35,247 - +1.1
35,251 + -0.3
35,296 + -0.3
35,299 + +0.6
35,299 + -1.0
35,713 + GFF1811 0.42 +0.3
35,737 - GFF1811 0.45 -0.3
35,737 - GFF1811 0.45 +0.7
35,867 - GFF1811 0.58 +1.3

Or see this region's nucleotide sequence