Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1772

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1771 and GFF1772 overlap by 11 nucleotidesGFF1772 and GFF1773 overlap by 8 nucleotidesGFF1773 and GFF1774 are separated by 189 nucleotides GFF1771 - Cytochrome c-type protein TorC, at 75,303 to 76,487 GFF1771 GFF1772 - Trimethylamine-N-oxide reductase (EC 1.6.6.9), at 76,477 to 79,029 GFF1772 GFF1773 - Chaperone protein TorD, at 79,022 to 79,654 GFF1773 GFF1774 - Cytochrome c551 peroxidase (EC 1.11.1.5), at 79,844 to 81,244 GFF1774 Position (kb) 76 77 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2at 75.484 kb on - strand, within GFF1771at 75.485 kb on + strand, within GFF1771at 75.486 kb on - strand, within GFF1771at 75.558 kb on - strand, within GFF1771at 75.558 kb on - strand, within GFF1771at 75.578 kb on + strand, within GFF1771at 75.579 kb on - strand, within GFF1771at 75.702 kb on - strand, within GFF1771at 75.732 kb on + strand, within GFF1771at 75.732 kb on + strand, within GFF1771at 75.732 kb on + strand, within GFF1771at 75.733 kb on - strand, within GFF1771at 75.733 kb on - strand, within GFF1771at 75.733 kb on - strand, within GFF1771at 75.909 kb on - strand, within GFF1771at 75.927 kb on + strand, within GFF1771at 75.928 kb on - strand, within GFF1771at 76.110 kb on - strand, within GFF1771at 76.241 kb on - strand, within GFF1771at 76.241 kb on - strand, within GFF1771at 76.251 kb on - strand, within GFF1771at 76.282 kb on - strand, within GFF1771at 76.283 kb on + strand, within GFF1771at 76.404 kb on - strandat 76.404 kb on - strandat 76.891 kb on + strand, within GFF1772at 77.023 kb on - strand, within GFF1772at 77.023 kb on - strand, within GFF1772at 77.169 kb on + strand, within GFF1772at 77.224 kb on + strand, within GFF1772at 77.228 kb on - strand, within GFF1772at 77.323 kb on - strand, within GFF1772at 77.334 kb on + strand, within GFF1772at 77.335 kb on - strand, within GFF1772at 77.385 kb on + strand, within GFF1772at 77.431 kb on + strand, within GFF1772at 77.431 kb on + strand, within GFF1772at 77.431 kb on + strand, within GFF1772at 77.461 kb on + strand, within GFF1772at 77.600 kb on + strand, within GFF1772at 77.601 kb on - strand, within GFF1772at 77.601 kb on - strand, within GFF1772at 77.601 kb on - strand, within GFF1772at 77.607 kb on + strand, within GFF1772at 77.607 kb on + strand, within GFF1772at 77.608 kb on - strand, within GFF1772at 77.966 kb on + strand, within GFF1772at 78.007 kb on + strand, within GFF1772at 78.105 kb on + strand, within GFF1772at 78.118 kb on - strand, within GFF1772at 78.334 kb on + strand, within GFF1772at 78.334 kb on + strand, within GFF1772at 78.366 kb on - strand, within GFF1772at 78.366 kb on - strand, within GFF1772at 78.552 kb on - strand, within GFF1772at 78.552 kb on - strand, within GFF1772at 78.552 kb on - strand, within GFF1772at 78.620 kb on - strand, within GFF1772at 78.648 kb on + strand, within GFF1772at 78.846 kb on + strandat 78.851 kb on + strandat 78.852 kb on - strandat 78.854 kb on + strandat 78.871 kb on - strandat 78.871 kb on - strandat 78.904 kb on - strandat 78.928 kb on + strandat 78.940 kb on - strandat 78.994 kb on + strandat 78.994 kb on + strandat 79.027 kb on + strandat 79.056 kb on - strandat 79.065 kb on + strandat 79.066 kb on - strandat 79.068 kb on - strandat 79.068 kb on - strandat 79.068 kb on - strandat 79.119 kb on + strand, within GFF1773at 79.120 kb on - strand, within GFF1773at 79.916 kb on + strandat 79.928 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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75,484 - GFF1771 0.15 +0.7
75,485 + GFF1771 0.15 +0.8
75,486 - GFF1771 0.15 -0.1
75,558 - GFF1771 0.22 +1.9
75,558 - GFF1771 0.22 -0.3
75,578 + GFF1771 0.23 +0.2
75,579 - GFF1771 0.23 -0.2
75,702 - GFF1771 0.34 +0.8
75,732 + GFF1771 0.36 +0.6
75,732 + GFF1771 0.36 -0.3
75,732 + GFF1771 0.36 -0.1
75,733 - GFF1771 0.36 +0.4
75,733 - GFF1771 0.36 +0.0
75,733 - GFF1771 0.36 +0.1
75,909 - GFF1771 0.51 -0.0
75,927 + GFF1771 0.53 +1.9
75,928 - GFF1771 0.53 -0.7
76,110 - GFF1771 0.68 -0.1
76,241 - GFF1771 0.79 -0.2
76,241 - GFF1771 0.79 -0.1
76,251 - GFF1771 0.80 -0.5
76,282 - GFF1771 0.83 +0.2
76,283 + GFF1771 0.83 +0.4
76,404 - -1.0
76,404 - +0.3
76,891 + GFF1772 0.16 -0.0
77,023 - GFF1772 0.21 +0.3
77,023 - GFF1772 0.21 -0.7
77,169 + GFF1772 0.27 -0.2
77,224 + GFF1772 0.29 -0.3
77,228 - GFF1772 0.29 -1.5
77,323 - GFF1772 0.33 -0.3
77,334 + GFF1772 0.34 -0.0
77,335 - GFF1772 0.34 +1.0
77,385 + GFF1772 0.36 -0.2
77,431 + GFF1772 0.37 +0.8
77,431 + GFF1772 0.37 -0.7
77,431 + GFF1772 0.37 -0.6
77,461 + GFF1772 0.39 +0.9
77,600 + GFF1772 0.44 +0.3
77,601 - GFF1772 0.44 -0.6
77,601 - GFF1772 0.44 +0.0
77,601 - GFF1772 0.44 -1.3
77,607 + GFF1772 0.44 +0.1
77,607 + GFF1772 0.44 -0.4
77,608 - GFF1772 0.44 +0.0
77,966 + GFF1772 0.58 +0.3
78,007 + GFF1772 0.60 +0.3
78,105 + GFF1772 0.64 -0.9
78,118 - GFF1772 0.64 -0.6
78,334 + GFF1772 0.73 -0.7
78,334 + GFF1772 0.73 -0.2
78,366 - GFF1772 0.74 -1.6
78,366 - GFF1772 0.74 -0.8
78,552 - GFF1772 0.81 -0.5
78,552 - GFF1772 0.81 -0.1
78,552 - GFF1772 0.81 +0.7
78,620 - GFF1772 0.84 +0.4
78,648 + GFF1772 0.85 -0.6
78,846 + -0.3
78,851 + -1.1
78,852 - -0.7
78,854 + +0.6
78,871 - -0.5
78,871 - +0.2
78,904 - +0.3
78,928 + +0.3
78,940 - -2.4
78,994 + +0.4
78,994 + -0.0
79,027 + +0.2
79,056 - -0.4
79,065 + +1.9
79,066 - -0.6
79,068 - +0.8
79,068 - -0.7
79,068 - -0.2
79,119 + GFF1773 0.15 -0.3
79,120 - GFF1773 0.15 +0.0
79,916 + +0.5
79,928 + -1.2

Or see this region's nucleotide sequence