Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1758

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1757 and GFF1758 are separated by 18 nucleotidesGFF1758 and GFF1759 are separated by 114 nucleotides GFF1757 - DNA gyrase subunit B (EC 5.99.1.3), at 58,570 to 60,984 GFF1757 GFF1758 - Putative LysR family transcriptional regulator, at 61,003 to 61,899 GFF1758 GFF1759 - Putative mandelate racemase STM3833, at 62,014 to 63,204 GFF1759 Position (kb) 61 62Strain fitness (log2 ratio) -1 0 1at 60.978 kb on + strandat 60.978 kb on + strandat 60.983 kb on - strandat 61.044 kb on - strandat 61.154 kb on - strand, within GFF1758at 61.161 kb on - strand, within GFF1758at 61.243 kb on - strand, within GFF1758at 61.486 kb on - strand, within GFF1758at 61.486 kb on - strand, within GFF1758at 61.529 kb on - strand, within GFF1758at 61.921 kb on + strandat 61.963 kb on + strandat 61.977 kb on - strandat 62.015 kb on + strandat 62.096 kb on + strandat 62.097 kb on - strandat 62.117 kb on + strandat 62.123 kb on + strandat 62.139 kb on + strand, within GFF1759at 62.205 kb on + strand, within GFF1759at 62.319 kb on + strand, within GFF1759at 62.481 kb on - strand, within GFF1759at 62.562 kb on + strand, within GFF1759at 62.601 kb on + strand, within GFF1759at 62.748 kb on - strand, within GFF1759at 62.770 kb on - strand, within GFF1759at 62.776 kb on - strand, within GFF1759at 62.776 kb on - strand, within GFF1759at 62.857 kb on - strand, within GFF1759

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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60,978 + +0.7
60,978 + +0.9
60,983 - -0.8
61,044 - -1.1
61,154 - GFF1758 0.17 -0.7
61,161 - GFF1758 0.18 +0.2
61,243 - GFF1758 0.27 -1.2
61,486 - GFF1758 0.54 -1.2
61,486 - GFF1758 0.54 -0.2
61,529 - GFF1758 0.59 +0.3
61,921 + +0.5
61,963 + -0.7
61,977 - -0.2
62,015 + +0.3
62,096 + -0.4
62,097 - -1.3
62,117 + +1.6
62,123 + -0.1
62,139 + GFF1759 0.10 +0.3
62,205 + GFF1759 0.16 +0.3
62,319 + GFF1759 0.26 -0.2
62,481 - GFF1759 0.39 +0.2
62,562 + GFF1759 0.46 -0.6
62,601 + GFF1759 0.49 +1.1
62,748 - GFF1759 0.62 -0.4
62,770 - GFF1759 0.63 +0.3
62,776 - GFF1759 0.64 -0.7
62,776 - GFF1759 0.64 -0.6
62,857 - GFF1759 0.71 +0.8

Or see this region's nucleotide sequence