Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1413

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1411 and GFF1412 are separated by 108 nucleotidesGFF1412 and GFF1413 are separated by 178 nucleotidesGFF1413 and GFF1414 overlap by 19 nucleotidesGFF1414 and GFF1415 are separated by 18 nucleotidesGFF1415 and GFF1416 are separated by 98 nucleotides GFF1411 - Diacylglycerol kinase (EC 2.7.1.107), at 58,902 to 59,270 GFF1411 GFF1412 - SOS-response repressor and protease LexA (EC 3.4.21.88), at 59,379 to 59,987 GFF1412 GFF1413 - DNA-damage-inducible protein F, at 60,166 to 61,491 GFF1413 GFF1414 - hypothetical protein, at 61,473 to 61,601 GFF1414 GFF1415 - UPF0337 protein yjbJ, at 61,620 to 61,832 GFF1415 GFF1416 - Zinc uptake regulation protein ZUR, at 61,931 to 62,446 GFF1416 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1 2at 59.209 kb on + strand, within GFF1411at 59.209 kb on + strand, within GFF1411at 59.986 kb on - strandat 60.109 kb on + strandat 60.228 kb on + strandat 60.359 kb on + strand, within GFF1413at 60.364 kb on - strand, within GFF1413at 60.509 kb on + strand, within GFF1413at 60.513 kb on + strand, within GFF1413at 60.514 kb on - strand, within GFF1413at 60.514 kb on - strand, within GFF1413at 60.770 kb on + strand, within GFF1413at 60.771 kb on - strand, within GFF1413at 60.792 kb on - strand, within GFF1413at 60.796 kb on - strand, within GFF1413at 60.828 kb on + strand, within GFF1413at 60.832 kb on + strand, within GFF1413at 60.834 kb on - strand, within GFF1413at 60.971 kb on + strand, within GFF1413at 61.085 kb on + strand, within GFF1413at 61.150 kb on + strand, within GFF1413at 61.170 kb on + strand, within GFF1413at 61.171 kb on - strand, within GFF1413at 61.203 kb on - strand, within GFF1413at 61.227 kb on + strand, within GFF1413at 61.228 kb on - strand, within GFF1413at 61.228 kb on - strand, within GFF1413at 61.241 kb on + strand, within GFF1413at 61.244 kb on + strand, within GFF1413at 61.259 kb on + strand, within GFF1413at 61.320 kb on + strand, within GFF1413at 61.443 kb on + strandat 61.444 kb on - strandat 61.470 kb on + strandat 61.470 kb on + strandat 61.471 kb on - strandat 61.542 kb on + strand, within GFF1414at 61.742 kb on - strand, within GFF1415at 61.834 kb on - strandat 61.854 kb on + strandat 61.854 kb on + strandat 61.855 kb on - strandat 61.882 kb on + strandat 61.882 kb on + strandat 61.907 kb on - strandat 62.000 kb on + strand, within GFF1416at 62.000 kb on + strand, within GFF1416at 62.001 kb on - strand, within GFF1416at 62.001 kb on - strand, within GFF1416at 62.007 kb on - strand, within GFF1416at 62.044 kb on + strand, within GFF1416at 62.044 kb on + strand, within GFF1416at 62.044 kb on + strand, within GFF1416at 62.045 kb on - strand, within GFF1416at 62.045 kb on - strand, within GFF1416at 62.045 kb on - strand, within GFF1416at 62.193 kb on + strand, within GFF1416at 62.194 kb on - strand, within GFF1416at 62.197 kb on + strand, within GFF1416at 62.198 kb on - strand, within GFF1416at 62.198 kb on - strand, within GFF1416at 62.257 kb on - strand, within GFF1416at 62.448 kb on + strandat 62.448 kb on + strandat 62.449 kb on - strandat 62.449 kb on - strandat 62.449 kb on - strandat 62.481 kb on + strandat 62.482 kb on - strandat 62.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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59,209 + GFF1411 0.83 +2.4
59,209 + GFF1411 0.83 -0.0
59,986 - +0.6
60,109 + +0.1
60,228 + +0.0
60,359 + GFF1413 0.15 -0.5
60,364 - GFF1413 0.15 +0.0
60,509 + GFF1413 0.26 -1.6
60,513 + GFF1413 0.26 -0.6
60,514 - GFF1413 0.26 -0.1
60,514 - GFF1413 0.26 -1.5
60,770 + GFF1413 0.46 +1.1
60,771 - GFF1413 0.46 +1.0
60,792 - GFF1413 0.47 +0.0
60,796 - GFF1413 0.48 -0.4
60,828 + GFF1413 0.50 -0.2
60,832 + GFF1413 0.50 +0.9
60,834 - GFF1413 0.50 -0.4
60,971 + GFF1413 0.61 +0.4
61,085 + GFF1413 0.69 +0.4
61,150 + GFF1413 0.74 -1.2
61,170 + GFF1413 0.76 +0.4
61,171 - GFF1413 0.76 +0.2
61,203 - GFF1413 0.78 -0.6
61,227 + GFF1413 0.80 -1.3
61,228 - GFF1413 0.80 -1.8
61,228 - GFF1413 0.80 -0.1
61,241 + GFF1413 0.81 +0.5
61,244 + GFF1413 0.81 +0.0
61,259 + GFF1413 0.82 +0.0
61,320 + GFF1413 0.87 -0.3
61,443 + +0.7
61,444 - +0.2
61,470 + -0.1
61,470 + -2.2
61,471 - +0.3
61,542 + GFF1414 0.53 -0.7
61,742 - GFF1415 0.57 +0.1
61,834 - +0.7
61,854 + +0.5
61,854 + +0.8
61,855 - -0.3
61,882 + -0.9
61,882 + -0.0
61,907 - -0.0
62,000 + GFF1416 0.13 +0.0
62,000 + GFF1416 0.13 -2.6
62,001 - GFF1416 0.14 -0.5
62,001 - GFF1416 0.14 -0.3
62,007 - GFF1416 0.15 -0.5
62,044 + GFF1416 0.22 -0.3
62,044 + GFF1416 0.22 -0.3
62,044 + GFF1416 0.22 -0.7
62,045 - GFF1416 0.22 -0.9
62,045 - GFF1416 0.22 +0.8
62,045 - GFF1416 0.22 -0.1
62,193 + GFF1416 0.51 +0.2
62,194 - GFF1416 0.51 -0.3
62,197 + GFF1416 0.52 -0.1
62,198 - GFF1416 0.52 -0.0
62,198 - GFF1416 0.52 -2.5
62,257 - GFF1416 0.63 +0.5
62,448 + -1.2
62,448 + -0.3
62,449 - +2.4
62,449 - +0.2
62,449 - -1.5
62,481 + +0.1
62,482 - +1.0
62,487 - +0.4

Or see this region's nucleotide sequence