Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1400

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1398 and GFF1399 overlap by 4 nucleotidesGFF1399 and GFF1400 overlap by 1 nucleotidesGFF1400 and GFF1401 are separated by 142 nucleotidesGFF1401 and GFF1402 are separated by 165 nucleotides GFF1398 - YjbF outer membrane lipoprotein, at 42,691 to 43,329 GFF1398 GFF1399 - YjbG polysaccharide synthesis-related protein, at 43,326 to 44,063 GFF1399 GFF1400 - YjbH outer membrane lipoprotein, at 44,063 to 46,159 GFF1400 GFF1401 - PsiE protein, at 46,302 to 46,712 GFF1401 GFF1402 - Maltose/maltodextrin ABC transporter, permease protein MalG, at 46,878 to 47,768 GFF1402 Position (kb) 44 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2at 43.125 kb on + strand, within GFF1398at 43.185 kb on - strand, within GFF1398at 43.185 kb on - strand, within GFF1398at 43.271 kb on - strandat 43.731 kb on + strand, within GFF1399at 43.732 kb on - strand, within GFF1399at 43.833 kb on + strand, within GFF1399at 43.876 kb on - strand, within GFF1399at 43.934 kb on + strand, within GFF1399at 43.934 kb on + strand, within GFF1399at 43.943 kb on + strand, within GFF1399at 43.944 kb on - strand, within GFF1399at 44.061 kb on + strandat 44.061 kb on + strandat 44.308 kb on + strand, within GFF1400at 44.320 kb on + strand, within GFF1400at 44.366 kb on + strand, within GFF1400at 44.480 kb on + strand, within GFF1400at 44.481 kb on - strand, within GFF1400at 44.483 kb on - strand, within GFF1400at 44.742 kb on - strand, within GFF1400at 44.742 kb on - strand, within GFF1400at 44.852 kb on - strand, within GFF1400at 44.858 kb on - strand, within GFF1400at 44.895 kb on + strand, within GFF1400at 45.048 kb on + strand, within GFF1400at 45.050 kb on + strand, within GFF1400at 45.051 kb on - strand, within GFF1400at 45.051 kb on - strand, within GFF1400at 45.051 kb on - strand, within GFF1400at 45.075 kb on - strand, within GFF1400at 45.075 kb on - strand, within GFF1400at 45.312 kb on - strand, within GFF1400at 45.312 kb on - strand, within GFF1400at 45.312 kb on - strand, within GFF1400at 45.314 kb on - strand, within GFF1400at 45.387 kb on - strand, within GFF1400at 45.388 kb on + strand, within GFF1400at 45.388 kb on + strand, within GFF1400at 45.388 kb on + strand, within GFF1400at 45.388 kb on + strand, within GFF1400at 45.388 kb on + strand, within GFF1400at 45.389 kb on - strand, within GFF1400at 45.389 kb on - strand, within GFF1400at 45.392 kb on + strand, within GFF1400at 45.392 kb on + strand, within GFF1400at 45.392 kb on + strand, within GFF1400at 45.393 kb on - strand, within GFF1400at 45.493 kb on + strand, within GFF1400at 45.498 kb on - strand, within GFF1400at 45.538 kb on + strand, within GFF1400at 45.555 kb on - strand, within GFF1400at 45.585 kb on + strand, within GFF1400at 45.586 kb on - strand, within GFF1400at 45.635 kb on + strand, within GFF1400at 45.767 kb on - strand, within GFF1400at 45.786 kb on - strand, within GFF1400at 45.815 kb on + strand, within GFF1400at 45.816 kb on - strand, within GFF1400at 45.952 kb on + strandat 46.002 kb on + strandat 46.127 kb on - strandat 46.127 kb on - strandat 46.208 kb on - strandat 46.240 kb on + strandat 46.264 kb on + strandat 46.465 kb on - strand, within GFF1401at 46.492 kb on - strand, within GFF1401at 46.535 kb on + strand, within GFF1401at 46.633 kb on + strand, within GFF1401at 46.633 kb on + strand, within GFF1401at 46.633 kb on + strand, within GFF1401at 46.633 kb on + strand, within GFF1401at 46.634 kb on - strand, within GFF1401at 46.634 kb on - strand, within GFF1401at 46.636 kb on + strand, within GFF1401at 46.636 kb on + strand, within GFF1401at 46.637 kb on - strand, within GFF1401at 46.668 kb on - strand, within GFF1401at 46.685 kb on + strandat 46.685 kb on + strandat 46.710 kb on + strandat 46.737 kb on - strandat 46.767 kb on + strandat 46.811 kb on + strandat 46.811 kb on + strandat 46.827 kb on - strandat 46.872 kb on + strandat 47.040 kb on - strand, within GFF1402at 47.040 kb on - strand, within GFF1402at 47.041 kb on + strand, within GFF1402at 47.041 kb on + strand, within GFF1402at 47.111 kb on + strand, within GFF1402at 47.111 kb on + strand, within GFF1402

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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43,125 + GFF1398 0.68 +0.2
43,185 - GFF1398 0.77 +0.3
43,185 - GFF1398 0.77 +0.4
43,271 - -1.4
43,731 + GFF1399 0.55 +0.9
43,732 - GFF1399 0.55 +1.3
43,833 + GFF1399 0.69 +0.1
43,876 - GFF1399 0.75 +2.1
43,934 + GFF1399 0.82 +0.2
43,934 + GFF1399 0.82 -0.9
43,943 + GFF1399 0.84 +0.0
43,944 - GFF1399 0.84 -0.5
44,061 + +0.5
44,061 + +0.3
44,308 + GFF1400 0.12 +0.7
44,320 + GFF1400 0.12 +0.8
44,366 + GFF1400 0.14 +0.8
44,480 + GFF1400 0.20 +1.2
44,481 - GFF1400 0.20 +0.8
44,483 - GFF1400 0.20 +0.7
44,742 - GFF1400 0.32 +0.9
44,742 - GFF1400 0.32 +0.6
44,852 - GFF1400 0.38 +2.7
44,858 - GFF1400 0.38 -0.1
44,895 + GFF1400 0.40 -0.4
45,048 + GFF1400 0.47 +0.3
45,050 + GFF1400 0.47 +0.5
45,051 - GFF1400 0.47 +0.0
45,051 - GFF1400 0.47 +0.3
45,051 - GFF1400 0.47 +0.2
45,075 - GFF1400 0.48 -0.1
45,075 - GFF1400 0.48 +0.4
45,312 - GFF1400 0.60 -0.2
45,312 - GFF1400 0.60 -0.9
45,312 - GFF1400 0.60 +0.4
45,314 - GFF1400 0.60 +0.4
45,387 - GFF1400 0.63 +0.2
45,388 + GFF1400 0.63 +1.4
45,388 + GFF1400 0.63 +1.6
45,388 + GFF1400 0.63 +0.1
45,388 + GFF1400 0.63 -0.7
45,388 + GFF1400 0.63 -0.1
45,389 - GFF1400 0.63 -0.5
45,389 - GFF1400 0.63 +0.3
45,392 + GFF1400 0.63 -1.1
45,392 + GFF1400 0.63 +0.6
45,392 + GFF1400 0.63 -0.4
45,393 - GFF1400 0.63 +0.2
45,493 + GFF1400 0.68 -0.2
45,498 - GFF1400 0.68 -0.5
45,538 + GFF1400 0.70 +0.5
45,555 - GFF1400 0.71 -0.1
45,585 + GFF1400 0.73 -0.1
45,586 - GFF1400 0.73 -0.3
45,635 + GFF1400 0.75 -0.3
45,767 - GFF1400 0.81 -1.2
45,786 - GFF1400 0.82 -0.1
45,815 + GFF1400 0.84 -1.9
45,816 - GFF1400 0.84 +0.1
45,952 + -0.2
46,002 + -0.2
46,127 - +2.7
46,127 - +0.1
46,208 - -0.2
46,240 + -0.6
46,264 + -0.0
46,465 - GFF1401 0.40 -1.1
46,492 - GFF1401 0.46 -1.5
46,535 + GFF1401 0.57 +0.9
46,633 + GFF1401 0.81 -0.1
46,633 + GFF1401 0.81 -2.1
46,633 + GFF1401 0.81 -0.1
46,633 + GFF1401 0.81 -0.1
46,634 - GFF1401 0.81 +0.2
46,634 - GFF1401 0.81 +0.0
46,636 + GFF1401 0.81 -1.2
46,636 + GFF1401 0.81 -0.5
46,637 - GFF1401 0.82 +0.4
46,668 - GFF1401 0.89 -1.2
46,685 + +0.3
46,685 + -0.3
46,710 + -0.7
46,737 - -0.7
46,767 + -0.2
46,811 + +0.9
46,811 + +0.0
46,827 - +0.6
46,872 + +0.3
47,040 - GFF1402 0.18 -0.2
47,040 - GFF1402 0.18 +0.9
47,041 + GFF1402 0.18 +0.0
47,041 + GFF1402 0.18 -0.6
47,111 + GFF1402 0.26 -0.9
47,111 + GFF1402 0.26 +0.2

Or see this region's nucleotide sequence