Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4603 and Echvi_4604 are separated by 64 nucleotides Echvi_4604 and Echvi_4605 overlap by 4 nucleotides Echvi_4605 and Echvi_4606 are separated by 3 nucleotides
Echvi_4603: Echvi_4603 - ATPase related to the helicase subunit of the Holliday junction resolvase, at 5,511,948 to 5,513,210
_4603
Echvi_4604: Echvi_4604 - Threonine aldolase, at 5,513,275 to 5,514,282
_4604
Echvi_4605: Echvi_4605 - Glycerophosphoryl diester phosphodiesterase, at 5,514,279 to 5,515,181
_4605
Echvi_4606: Echvi_4606 - Protein of unknown function (DUF2721)., at 5,515,185 to 5,515,649
_4606
Position (kb) 5513
5514
5515 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5512.445 kb on - strand, within Echvi_4603 at 5512.504 kb on + strand, within Echvi_4603 at 5512.505 kb on - strand, within Echvi_4603 at 5512.528 kb on + strand, within Echvi_4603 at 5512.620 kb on + strand, within Echvi_4603 at 5512.681 kb on - strand, within Echvi_4603 at 5512.772 kb on + strand, within Echvi_4603 at 5512.840 kb on - strand, within Echvi_4603 at 5512.895 kb on + strand, within Echvi_4603 at 5512.896 kb on - strand, within Echvi_4603 at 5512.997 kb on + strand, within Echvi_4603 at 5513.003 kb on + strand, within Echvi_4603 at 5513.213 kb on - strand at 5513.213 kb on - strand at 5513.538 kb on + strand, within Echvi_4604 at 5513.538 kb on + strand, within Echvi_4604 at 5513.539 kb on - strand, within Echvi_4604 at 5513.555 kb on + strand, within Echvi_4604 at 5513.555 kb on + strand, within Echvi_4604 at 5513.592 kb on + strand, within Echvi_4604 at 5513.657 kb on - strand at 5513.843 kb on + strand, within Echvi_4604 at 5513.908 kb on + strand, within Echvi_4604 at 5513.909 kb on - strand, within Echvi_4604 at 5513.909 kb on - strand, within Echvi_4604 at 5513.909 kb on - strand, within Echvi_4604 at 5513.950 kb on + strand, within Echvi_4604 at 5513.950 kb on + strand, within Echvi_4604 at 5513.950 kb on + strand, within Echvi_4604 at 5514.026 kb on + strand, within Echvi_4604 at 5514.030 kb on + strand, within Echvi_4604 at 5514.205 kb on + strand at 5514.244 kb on - strand at 5514.267 kb on + strand at 5514.274 kb on + strand at 5514.275 kb on - strand at 5514.275 kb on - strand at 5514.275 kb on - strand at 5514.417 kb on + strand, within Echvi_4605 at 5514.417 kb on + strand, within Echvi_4605 at 5514.762 kb on - strand, within Echvi_4605 at 5514.818 kb on - strand, within Echvi_4605 at 5514.852 kb on - strand, within Echvi_4605 at 5514.866 kb on + strand, within Echvi_4605 at 5514.867 kb on - strand, within Echvi_4605 at 5514.945 kb on + strand, within Echvi_4605 at 5514.946 kb on - strand, within Echvi_4605 at 5514.946 kb on - strand, within Echvi_4605 at 5514.946 kb on - strand, within Echvi_4605 at 5514.949 kb on + strand, within Echvi_4605 at 5515.076 kb on + strand, within Echvi_4605 at 5515.186 kb on + strand at 5515.187 kb on - strand at 5515.193 kb on + strand at 5515.276 kb on - strand, within Echvi_4606
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 5,512,445 - Echvi_4603 0.39 +0.9 5,512,504 + Echvi_4603 0.44 -0.2 5,512,505 - Echvi_4603 0.44 -0.6 5,512,528 + Echvi_4603 0.46 +1.5 5,512,620 + Echvi_4603 0.53 -0.7 5,512,681 - Echvi_4603 0.58 -0.5 5,512,772 + Echvi_4603 0.65 +1.3 5,512,840 - Echvi_4603 0.71 +0.4 5,512,895 + Echvi_4603 0.75 +0.2 5,512,896 - Echvi_4603 0.75 -1.6 5,512,997 + Echvi_4603 0.83 -2.2 5,513,003 + Echvi_4603 0.84 +0.4 5,513,213 - -3.4 5,513,213 - -2.3 5,513,538 + Echvi_4604 0.26 +0.7 5,513,538 + Echvi_4604 0.26 -0.4 5,513,539 - Echvi_4604 0.26 -3.0 5,513,555 + Echvi_4604 0.28 -2.0 5,513,555 + Echvi_4604 0.28 -0.9 5,513,592 + Echvi_4604 0.31 -0.6 5,513,657 - +4.5 5,513,843 + Echvi_4604 0.56 -1.6 5,513,908 + Echvi_4604 0.63 +0.4 5,513,909 - Echvi_4604 0.63 +0.1 5,513,909 - Echvi_4604 0.63 -0.7 5,513,909 - Echvi_4604 0.63 -1.6 5,513,950 + Echvi_4604 0.67 +0.3 5,513,950 + Echvi_4604 0.67 -1.4 5,513,950 + Echvi_4604 0.67 -1.3 5,514,026 + Echvi_4604 0.75 -0.3 5,514,030 + Echvi_4604 0.75 -1.1 5,514,205 + -1.3 5,514,244 - -1.8 5,514,267 + +0.2 5,514,274 + -0.3 5,514,275 - +0.4 5,514,275 - -1.9 5,514,275 - -2.0 5,514,417 + Echvi_4605 0.15 -0.3 5,514,417 + Echvi_4605 0.15 -0.9 5,514,762 - Echvi_4605 0.53 +0.5 5,514,818 - Echvi_4605 0.60 +1.4 5,514,852 - Echvi_4605 0.63 -1.5 5,514,866 + Echvi_4605 0.65 -2.2 5,514,867 - Echvi_4605 0.65 +0.9 5,514,945 + Echvi_4605 0.74 -1.8 5,514,946 - Echvi_4605 0.74 +1.1 5,514,946 - Echvi_4605 0.74 -0.7 5,514,946 - Echvi_4605 0.74 +0.8 5,514,949 + Echvi_4605 0.74 -1.2 5,515,076 + Echvi_4605 0.88 -2.0 5,515,186 + -0.3 5,515,187 - +2.1 5,515,193 + +1.2 5,515,276 - Echvi_4606 0.20 -2.6
Or see this region's nucleotide sequence