Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0189 and Echvi_0190 are separated by 100 nucleotides Echvi_0190 and Echvi_0191 are separated by 29 nucleotides Echvi_0191 and Echvi_0192 are separated by 322 nucleotides
Echvi_0189: Echvi_0189 - translation elongation factor P, at 206,324 to 206,887
_0189
Echvi_0190: Echvi_0190 - acetyl-CoA carboxylase, biotin carboxyl carrier protein, at 206,988 to 207,473
_0190
Echvi_0191: Echvi_0191 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 207,503 to 208,852
_0191
Echvi_0192: Echvi_0192 - hypothetical protein, at 209,175 to 209,792
_0192
Position (kb) 207
208
209 Strain fitness (log2 ratio) -2
-1
0
1
2 at 206.916 kb on + strand at 206.920 kb on + strand at 206.926 kb on + strand at 208.818 kb on + strand at 208.872 kb on + strand at 208.873 kb on - strand at 208.878 kb on - strand at 208.903 kb on - strand at 208.903 kb on - strand at 208.991 kb on - strand at 208.991 kb on - strand at 209.002 kb on - strand at 209.048 kb on + strand at 209.109 kb on - strand at 209.109 kb on - strand at 209.165 kb on + strand at 209.176 kb on + strand at 209.224 kb on + strand at 209.251 kb on + strand, within Echvi_0192 at 209.252 kb on - strand, within Echvi_0192 at 209.274 kb on - strand, within Echvi_0192 at 209.274 kb on - strand, within Echvi_0192 at 209.287 kb on - strand, within Echvi_0192 at 209.294 kb on + strand, within Echvi_0192 at 209.344 kb on + strand, within Echvi_0192 at 209.383 kb on + strand, within Echvi_0192 at 209.390 kb on + strand, within Echvi_0192 at 209.400 kb on + strand, within Echvi_0192 at 209.400 kb on + strand, within Echvi_0192 at 209.401 kb on - strand, within Echvi_0192 at 209.412 kb on + strand, within Echvi_0192 at 209.418 kb on - strand, within Echvi_0192 at 209.448 kb on + strand, within Echvi_0192 at 209.528 kb on - strand, within Echvi_0192 at 209.594 kb on + strand, within Echvi_0192 at 209.637 kb on - strand, within Echvi_0192 at 209.640 kb on + strand, within Echvi_0192 at 209.640 kb on + strand, within Echvi_0192 at 209.640 kb on + strand, within Echvi_0192 at 209.731 kb on - strand at 209.772 kb on - strand at 209.778 kb on - strand at 209.778 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 206,916 + -1.4 206,920 + -1.8 206,926 + +1.7 208,818 + -0.5 208,872 + +0.8 208,873 - +0.2 208,878 - +1.8 208,903 - -0.8 208,903 - -1.3 208,991 - -1.6 208,991 - +0.9 209,002 - +0.0 209,048 + -1.3 209,109 - -1.1 209,109 - +0.2 209,165 + +0.9 209,176 + -2.0 209,224 + +1.9 209,251 + Echvi_0192 0.12 +0.1 209,252 - Echvi_0192 0.12 -2.2 209,274 - Echvi_0192 0.16 -2.5 209,274 - Echvi_0192 0.16 -0.7 209,287 - Echvi_0192 0.18 -0.5 209,294 + Echvi_0192 0.19 -2.4 209,344 + Echvi_0192 0.27 -1.1 209,383 + Echvi_0192 0.34 -0.4 209,390 + Echvi_0192 0.35 +0.9 209,400 + Echvi_0192 0.36 +1.5 209,400 + Echvi_0192 0.36 -0.9 209,401 - Echvi_0192 0.37 -1.8 209,412 + Echvi_0192 0.38 -2.1 209,418 - Echvi_0192 0.39 -1.8 209,448 + Echvi_0192 0.44 +0.4 209,528 - Echvi_0192 0.57 -1.7 209,594 + Echvi_0192 0.68 -0.7 209,637 - Echvi_0192 0.75 -1.6 209,640 + Echvi_0192 0.75 -1.6 209,640 + Echvi_0192 0.75 -1.5 209,640 + Echvi_0192 0.75 -0.6 209,731 - +1.7 209,772 - -1.2 209,778 - -0.6 209,778 - -0.4
Or see this region's nucleotide sequence