Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0125

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0124 and Echvi_0125 are separated by 22 nucleotidesEchvi_0125 and Echvi_0126 are separated by 9 nucleotidesEchvi_0126 and Echvi_0127 are separated by 104 nucleotides Echvi_0124: Echvi_0124 - Aspartate/tyrosine/aromatic aminotransferase, at 124,289 to 125,449 _0124 Echvi_0125: Echvi_0125 - Prephenate dehydrogenase, at 125,472 to 126,320 _0125 Echvi_0126: Echvi_0126 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 126,330 to 127,097 _0126 Echvi_0127: Echvi_0127 - hypothetical protein, at 127,202 to 127,438 _0127 Position (kb) 125 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 124.491 kb on - strand, within Echvi_0124at 124.614 kb on + strand, within Echvi_0124at 124.625 kb on + strand, within Echvi_0124at 124.647 kb on + strand, within Echvi_0124at 124.672 kb on + strand, within Echvi_0124at 124.673 kb on - strand, within Echvi_0124at 124.673 kb on - strand, within Echvi_0124at 124.676 kb on + strand, within Echvi_0124at 124.677 kb on - strand, within Echvi_0124at 124.677 kb on - strand, within Echvi_0124at 124.808 kb on + strand, within Echvi_0124at 124.808 kb on + strand, within Echvi_0124at 124.809 kb on - strand, within Echvi_0124at 124.809 kb on - strand, within Echvi_0124at 124.911 kb on - strand, within Echvi_0124at 124.948 kb on - strand, within Echvi_0124at 124.977 kb on + strand, within Echvi_0124at 125.005 kb on + strand, within Echvi_0124at 125.055 kb on + strand, within Echvi_0124at 125.067 kb on + strand, within Echvi_0124at 125.369 kb on + strandat 125.369 kb on + strandat 125.369 kb on + strandat 125.447 kb on + strandat 125.448 kb on - strandat 125.471 kb on + strandat 125.471 kb on + strandat 125.472 kb on - strandat 125.472 kb on - strandat 125.551 kb on + strandat 125.551 kb on + strandat 125.552 kb on - strandat 125.572 kb on + strand, within Echvi_0125at 125.678 kb on + strand, within Echvi_0125at 125.714 kb on + strand, within Echvi_0125at 125.714 kb on + strand, within Echvi_0125at 125.715 kb on - strand, within Echvi_0125at 125.715 kb on - strand, within Echvi_0125at 125.762 kb on + strand, within Echvi_0125at 125.762 kb on + strand, within Echvi_0125at 125.763 kb on - strand, within Echvi_0125at 125.763 kb on - strand, within Echvi_0125at 125.835 kb on + strand, within Echvi_0125at 125.835 kb on + strand, within Echvi_0125at 125.835 kb on + strand, within Echvi_0125at 125.836 kb on - strand, within Echvi_0125at 126.039 kb on - strand, within Echvi_0125at 126.158 kb on + strand, within Echvi_0125at 126.159 kb on - strand, within Echvi_0125at 126.182 kb on + strand, within Echvi_0125at 126.204 kb on + strand, within Echvi_0125at 126.312 kb on - strandat 126.326 kb on - strandat 126.342 kb on - strandat 126.377 kb on - strandat 126.501 kb on + strand, within Echvi_0126at 126.616 kb on + strand, within Echvi_0126at 126.616 kb on + strand, within Echvi_0126at 126.616 kb on + strand, within Echvi_0126at 126.616 kb on + strand, within Echvi_0126at 126.617 kb on - strand, within Echvi_0126at 126.617 kb on - strand, within Echvi_0126at 126.617 kb on - strand, within Echvi_0126at 126.638 kb on - strand, within Echvi_0126at 126.711 kb on - strand, within Echvi_0126at 126.777 kb on - strand, within Echvi_0126at 126.827 kb on + strand, within Echvi_0126at 126.827 kb on + strand, within Echvi_0126at 126.827 kb on + strand, within Echvi_0126at 127.057 kb on - strandat 127.057 kb on - strandat 127.057 kb on - strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.080 kb on - strandat 127.080 kb on - strandat 127.081 kb on + strandat 127.081 kb on + strandat 127.082 kb on - strandat 127.082 kb on - strandat 127.088 kb on + strandat 127.185 kb on + strandat 127.193 kb on + strandat 127.198 kb on + strandat 127.198 kb on + strandat 127.200 kb on + strandat 127.240 kb on + strand, within Echvi_0127at 127.250 kb on + strand, within Echvi_0127at 127.280 kb on - strand, within Echvi_0127

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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124,491 - Echvi_0124 0.17 -3.5
124,614 + Echvi_0124 0.28 +0.9
124,625 + Echvi_0124 0.29 +0.4
124,647 + Echvi_0124 0.31 -0.8
124,672 + Echvi_0124 0.33 -1.0
124,673 - Echvi_0124 0.33 -0.2
124,673 - Echvi_0124 0.33 -0.7
124,676 + Echvi_0124 0.33 +0.9
124,677 - Echvi_0124 0.33 -0.8
124,677 - Echvi_0124 0.33 -0.4
124,808 + Echvi_0124 0.45 -0.2
124,808 + Echvi_0124 0.45 +2.0
124,809 - Echvi_0124 0.45 -1.9
124,809 - Echvi_0124 0.45 -0.6
124,911 - Echvi_0124 0.54 +1.8
124,948 - Echvi_0124 0.57 -0.2
124,977 + Echvi_0124 0.59 -2.1
125,005 + Echvi_0124 0.62 -1.8
125,055 + Echvi_0124 0.66 -1.7
125,067 + Echvi_0124 0.67 -2.2
125,369 + -2.6
125,369 + -0.4
125,369 + +0.7
125,447 + -0.5
125,448 - +1.2
125,471 + +1.0
125,471 + -2.5
125,472 - -1.5
125,472 - +0.6
125,551 + -2.6
125,551 + -1.2
125,552 - -0.6
125,572 + Echvi_0125 0.12 -1.2
125,678 + Echvi_0125 0.24 +0.5
125,714 + Echvi_0125 0.29 -2.8
125,714 + Echvi_0125 0.29 +1.2
125,715 - Echvi_0125 0.29 -1.3
125,715 - Echvi_0125 0.29 -3.5
125,762 + Echvi_0125 0.34 -0.3
125,762 + Echvi_0125 0.34 -0.2
125,763 - Echvi_0125 0.34 -1.4
125,763 - Echvi_0125 0.34 -0.6
125,835 + Echvi_0125 0.43 +0.2
125,835 + Echvi_0125 0.43 -1.9
125,835 + Echvi_0125 0.43 +0.4
125,836 - Echvi_0125 0.43 -2.4
126,039 - Echvi_0125 0.67 +0.8
126,158 + Echvi_0125 0.81 -0.4
126,159 - Echvi_0125 0.81 -1.1
126,182 + Echvi_0125 0.84 -0.4
126,204 + Echvi_0125 0.86 +0.4
126,312 - +0.1
126,326 - -0.0
126,342 - -0.9
126,377 - +0.8
126,501 + Echvi_0126 0.22 -0.2
126,616 + Echvi_0126 0.37 -0.8
126,616 + Echvi_0126 0.37 +0.2
126,616 + Echvi_0126 0.37 -0.5
126,616 + Echvi_0126 0.37 +0.6
126,617 - Echvi_0126 0.37 -0.0
126,617 - Echvi_0126 0.37 +1.4
126,617 - Echvi_0126 0.37 -2.1
126,638 - Echvi_0126 0.40 +0.6
126,711 - Echvi_0126 0.50 +0.9
126,777 - Echvi_0126 0.58 -0.2
126,827 + Echvi_0126 0.65 +1.8
126,827 + Echvi_0126 0.65 +0.6
126,827 + Echvi_0126 0.65 -0.6
127,057 - -1.5
127,057 - -0.6
127,057 - -0.2
127,079 + +0.1
127,079 + -0.6
127,079 + +0.5
127,079 + +0.7
127,079 + -0.8
127,079 + +0.1
127,079 + -1.0
127,079 + -0.2
127,080 - -0.8
127,080 - +0.5
127,081 + +0.4
127,081 + +0.8
127,082 - +0.5
127,082 - +3.0
127,088 + +0.3
127,185 + +1.5
127,193 + -2.2
127,198 + -1.2
127,198 + -0.4
127,200 + +0.9
127,240 + Echvi_0127 0.16 +0.1
127,250 + Echvi_0127 0.20 +0.3
127,280 - Echvi_0127 0.33 -1.1

Or see this region's nucleotide sequence