Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18690

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18675 and CA264_18680 are separated by 128 nucleotidesCA264_18680 and CA264_18685 are separated by 78 nucleotidesCA264_18685 and CA264_18690 are separated by 116 nucleotidesCA264_18690 and CA264_18695 overlap by 4 nucleotides CA264_18675: CA264_18675 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 4,339,046 to 4,339,543 _18675 CA264_18680: CA264_18680 - Fe-S assembly protein IscX, at 4,339,672 to 4,339,908 _18680 CA264_18685: CA264_18685 - ferredoxin, at 4,339,987 to 4,340,301 _18685 CA264_18690: CA264_18690 - hypothetical protein, at 4,340,418 to 4,341,197 _18690 CA264_18695: CA264_18695 - glycogen synthase, at 4,341,194 to 4,342,417 _18695 Position (kb) 4340 4341 4342Strain fitness (log2 ratio) -1 0 1at 4339.481 kb on + strand, within CA264_18675at 4339.569 kb on + strandat 4339.574 kb on + strandat 4339.575 kb on - strandat 4339.634 kb on - strandat 4339.908 kb on + strandat 4339.930 kb on - strandat 4339.943 kb on + strandat 4339.981 kb on - strandat 4340.334 kb on - strandat 4340.334 kb on - strandat 4340.347 kb on - strandat 4340.443 kb on - strandat 4341.189 kb on + strandat 4341.209 kb on - strandat 4341.209 kb on - strandat 4341.270 kb on + strandat 4341.310 kb on - strandat 4341.327 kb on + strand, within CA264_18695at 4341.377 kb on + strand, within CA264_18695at 4341.378 kb on - strand, within CA264_18695at 4341.423 kb on + strand, within CA264_18695at 4341.423 kb on + strand, within CA264_18695at 4341.566 kb on + strand, within CA264_18695at 4341.567 kb on - strand, within CA264_18695at 4341.693 kb on + strand, within CA264_18695at 4341.698 kb on + strand, within CA264_18695at 4341.698 kb on + strand, within CA264_18695at 4341.699 kb on - strand, within CA264_18695at 4341.810 kb on + strand, within CA264_18695at 4341.810 kb on + strand, within CA264_18695at 4341.810 kb on + strand, within CA264_18695at 4341.811 kb on - strand, within CA264_18695at 4341.914 kb on + strand, within CA264_18695at 4341.915 kb on - strand, within CA264_18695at 4341.915 kb on - strand, within CA264_18695at 4341.915 kb on - strand, within CA264_18695at 4341.929 kb on + strand, within CA264_18695at 4341.973 kb on + strand, within CA264_18695at 4341.973 kb on + strand, within CA264_18695at 4341.974 kb on - strand, within CA264_18695at 4341.978 kb on + strand, within CA264_18695at 4341.979 kb on - strand, within CA264_18695at 4341.990 kb on + strand, within CA264_18695at 4342.046 kb on + strand, within CA264_18695at 4342.047 kb on - strand, within CA264_18695at 4342.055 kb on + strand, within CA264_18695at 4342.085 kb on + strand, within CA264_18695at 4342.085 kb on + strand, within CA264_18695at 4342.114 kb on + strand, within CA264_18695

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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4,339,481 + CA264_18675 0.87 -1.0
4,339,569 + -0.5
4,339,574 + -1.3
4,339,575 - +0.8
4,339,634 - +0.2
4,339,908 + -0.5
4,339,930 - -1.1
4,339,943 + -1.1
4,339,981 - -0.6
4,340,334 - +0.1
4,340,334 - +0.2
4,340,347 - +0.0
4,340,443 - +0.2
4,341,189 + -0.2
4,341,209 - -0.1
4,341,209 - +0.0
4,341,270 + +1.4
4,341,310 - -0.5
4,341,327 + CA264_18695 0.11 -0.2
4,341,377 + CA264_18695 0.15 +0.0
4,341,378 - CA264_18695 0.15 -0.3
4,341,423 + CA264_18695 0.19 +0.7
4,341,423 + CA264_18695 0.19 -0.8
4,341,566 + CA264_18695 0.30 -0.1
4,341,567 - CA264_18695 0.30 +0.0
4,341,693 + CA264_18695 0.41 +1.6
4,341,698 + CA264_18695 0.41 -1.6
4,341,698 + CA264_18695 0.41 -0.1
4,341,699 - CA264_18695 0.41 -0.1
4,341,810 + CA264_18695 0.50 +0.5
4,341,810 + CA264_18695 0.50 +0.7
4,341,810 + CA264_18695 0.50 +0.2
4,341,811 - CA264_18695 0.50 -0.9
4,341,914 + CA264_18695 0.59 +0.4
4,341,915 - CA264_18695 0.59 -0.2
4,341,915 - CA264_18695 0.59 -0.1
4,341,915 - CA264_18695 0.59 -0.3
4,341,929 + CA264_18695 0.60 +1.4
4,341,973 + CA264_18695 0.64 +1.0
4,341,973 + CA264_18695 0.64 -0.1
4,341,974 - CA264_18695 0.64 -0.1
4,341,978 + CA264_18695 0.64 +0.2
4,341,979 - CA264_18695 0.64 -0.5
4,341,990 + CA264_18695 0.65 +1.1
4,342,046 + CA264_18695 0.70 -0.6
4,342,047 - CA264_18695 0.70 -0.1
4,342,055 + CA264_18695 0.70 +0.0
4,342,085 + CA264_18695 0.73 -0.5
4,342,085 + CA264_18695 0.73 -0.3
4,342,114 + CA264_18695 0.75 +0.2

Or see this region's nucleotide sequence