Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18260

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18255 and CA264_18260 are separated by 288 nucleotidesCA264_18260 and CA264_18265 are separated by 541 nucleotides CA264_18255: CA264_18255 - hypothetical protein, at 4,244,161 to 4,247,547 _18255 CA264_18260: CA264_18260 - NADH-quinone oxidoreductase subunit C, at 4,247,836 to 4,248,432 _18260 CA264_18265: CA264_18265 - hypothetical protein, at 4,248,974 to 4,249,774 _18265 Position (kb) 4247 4248 4249Strain fitness (log2 ratio) -1 0 1 2at 4247.024 kb on + strand, within CA264_18255at 4247.032 kb on + strand, within CA264_18255at 4247.032 kb on + strand, within CA264_18255at 4247.032 kb on + strand, within CA264_18255at 4247.033 kb on - strand, within CA264_18255at 4247.033 kb on - strand, within CA264_18255at 4247.033 kb on - strand, within CA264_18255at 4247.099 kb on + strand, within CA264_18255at 4247.133 kb on + strand, within CA264_18255at 4247.133 kb on + strand, within CA264_18255at 4247.134 kb on - strand, within CA264_18255at 4247.151 kb on + strand, within CA264_18255at 4247.151 kb on + strand, within CA264_18255at 4247.152 kb on - strand, within CA264_18255at 4247.152 kb on - strand, within CA264_18255at 4247.167 kb on + strand, within CA264_18255at 4247.167 kb on + strand, within CA264_18255at 4247.210 kb on + strandat 4247.230 kb on + strandat 4247.345 kb on + strandat 4247.345 kb on + strandat 4247.403 kb on + strandat 4247.552 kb on + strandat 4247.670 kb on + strandat 4247.739 kb on - strandat 4247.769 kb on + strandat 4247.769 kb on + strandat 4247.774 kb on - strandat 4247.852 kb on + strandat 4247.852 kb on + strandat 4247.867 kb on + strandat 4247.990 kb on - strand, within CA264_18260at 4248.310 kb on + strand, within CA264_18260at 4248.310 kb on + strand, within CA264_18260at 4248.313 kb on + strand, within CA264_18260at 4248.313 kb on + strand, within CA264_18260at 4248.314 kb on - strand, within CA264_18260at 4248.383 kb on + strandat 4248.384 kb on - strandat 4248.384 kb on - strandat 4248.430 kb on + strandat 4248.431 kb on - strandat 4248.464 kb on + strandat 4248.464 kb on + strandat 4248.464 kb on + strandat 4248.469 kb on + strandat 4248.469 kb on + strandat 4248.470 kb on - strandat 4248.518 kb on + strandat 4248.518 kb on + strandat 4248.561 kb on + strandat 4248.561 kb on + strandat 4248.561 kb on + strandat 4248.562 kb on - strandat 4248.562 kb on - strandat 4248.567 kb on - strandat 4248.593 kb on + strandat 4248.604 kb on + strandat 4248.608 kb on + strandat 4248.609 kb on - strandat 4248.697 kb on - strandat 4248.717 kb on - strandat 4248.717 kb on - strandat 4248.813 kb on + strandat 4248.813 kb on + strandat 4248.813 kb on + strandat 4248.814 kb on - strandat 4248.814 kb on - strandat 4248.815 kb on + strandat 4248.894 kb on + strandat 4248.894 kb on + strandat 4248.961 kb on + strandat 4248.962 kb on - strandat 4249.290 kb on - strand, within CA264_18265at 4249.306 kb on + strand, within CA264_18265at 4249.350 kb on + strand, within CA264_18265

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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4,247,024 + CA264_18255 0.85 -0.2
4,247,032 + CA264_18255 0.85 -0.2
4,247,032 + CA264_18255 0.85 -0.4
4,247,032 + CA264_18255 0.85 +1.5
4,247,033 - CA264_18255 0.85 +0.3
4,247,033 - CA264_18255 0.85 -0.7
4,247,033 - CA264_18255 0.85 -0.2
4,247,099 + CA264_18255 0.87 +0.5
4,247,133 + CA264_18255 0.88 +0.3
4,247,133 + CA264_18255 0.88 -0.2
4,247,134 - CA264_18255 0.88 +0.5
4,247,151 + CA264_18255 0.88 +0.0
4,247,151 + CA264_18255 0.88 +0.4
4,247,152 - CA264_18255 0.88 +1.3
4,247,152 - CA264_18255 0.88 -0.1
4,247,167 + CA264_18255 0.89 +0.5
4,247,167 + CA264_18255 0.89 +0.1
4,247,210 + +0.2
4,247,230 + +0.9
4,247,345 + -0.9
4,247,345 + -0.3
4,247,403 + -0.5
4,247,552 + -0.6
4,247,670 + +0.6
4,247,739 - +0.5
4,247,769 + -0.2
4,247,769 + -1.0
4,247,774 - -0.1
4,247,852 + +1.3
4,247,852 + +0.2
4,247,867 + +0.3
4,247,990 - CA264_18260 0.26 +1.1
4,248,310 + CA264_18260 0.79 +0.5
4,248,310 + CA264_18260 0.79 +1.3
4,248,313 + CA264_18260 0.80 +0.9
4,248,313 + CA264_18260 0.80 +0.4
4,248,314 - CA264_18260 0.80 +1.1
4,248,383 + -1.3
4,248,384 - +0.6
4,248,384 - -0.0
4,248,430 + +0.2
4,248,431 - +0.8
4,248,464 + -0.4
4,248,464 + -0.6
4,248,464 + +0.2
4,248,469 + +0.5
4,248,469 + +1.1
4,248,470 - +0.3
4,248,518 + +0.0
4,248,518 + +0.1
4,248,561 + +0.2
4,248,561 + +1.2
4,248,561 + +0.0
4,248,562 - +1.8
4,248,562 - +1.0
4,248,567 - -0.2
4,248,593 + +0.5
4,248,604 + +0.0
4,248,608 + +0.2
4,248,609 - -0.1
4,248,697 - +0.6
4,248,717 - +0.4
4,248,717 - -0.2
4,248,813 + +1.0
4,248,813 + +0.1
4,248,813 + +0.5
4,248,814 - -0.9
4,248,814 - +0.1
4,248,815 + +0.0
4,248,894 + -0.2
4,248,894 + -0.0
4,248,961 + -0.2
4,248,962 - -0.9
4,249,290 - CA264_18265 0.39 +0.3
4,249,306 + CA264_18265 0.41 -0.6
4,249,350 + CA264_18265 0.47 -0.3

Or see this region's nucleotide sequence