Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16145 and CA264_16150 are separated by 4 nucleotides CA264_16150 and CA264_16155 are separated by 249 nucleotides CA264_16155 and CA264_16160 are separated by 256 nucleotides CA264_16160 and CA264_16165 are separated by 16 nucleotides
CA264_16145: CA264_16145 - copper transporter, at 3,758,672 to 3,762,079
_16145
CA264_16150: CA264_16150 - acyl carrier protein, at 3,762,084 to 3,762,341
_16150
CA264_16155: CA264_16155 - hypothetical protein, at 3,762,591 to 3,763,331
_16155
CA264_16160: CA264_16160 - hypothetical protein, at 3,763,588 to 3,763,914
_16160
CA264_16165: CA264_16165 - hypothetical protein, at 3,763,931 to 3,764,479
_16165
Position (kb)
3762
3763
3764 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3761.605 kb on + strand, within CA264_16145 at 3761.686 kb on + strand, within CA264_16145 at 3761.701 kb on - strand, within CA264_16145 at 3761.832 kb on - strand at 3761.970 kb on - strand at 3762.056 kb on - strand at 3762.068 kb on + strand at 3762.069 kb on - strand at 3762.078 kb on - strand at 3762.084 kb on - strand at 3762.151 kb on + strand, within CA264_16150 at 3762.339 kb on + strand at 3762.397 kb on + strand at 3762.538 kb on + strand at 3762.553 kb on + strand at 3762.555 kb on + strand at 3762.568 kb on + strand at 3762.568 kb on + strand at 3762.569 kb on - strand at 3762.569 kb on - strand at 3762.569 kb on - strand at 3762.575 kb on + strand at 3762.582 kb on - strand at 3762.728 kb on - strand, within CA264_16155 at 3762.773 kb on + strand, within CA264_16155 at 3762.865 kb on + strand, within CA264_16155 at 3762.887 kb on - strand, within CA264_16155 at 3762.987 kb on - strand, within CA264_16155 at 3763.065 kb on - strand, within CA264_16155 at 3763.158 kb on - strand, within CA264_16155 at 3763.207 kb on - strand, within CA264_16155 at 3763.232 kb on + strand, within CA264_16155 at 3763.315 kb on - strand at 3763.453 kb on + strand at 3763.548 kb on + strand at 3763.576 kb on - strand at 3763.579 kb on + strand at 3763.579 kb on + strand at 3763.932 kb on + strand at 3763.933 kb on - strand at 3763.959 kb on - strand at 3764.014 kb on + strand, within CA264_16165 at 3764.106 kb on - strand, within CA264_16165 at 3764.107 kb on + strand, within CA264_16165 at 3764.107 kb on + strand, within CA264_16165 at 3764.107 kb on + strand, within CA264_16165 at 3764.108 kb on - strand, within CA264_16165 at 3764.108 kb on - strand, within CA264_16165 at 3764.154 kb on - strand, within CA264_16165 at 3764.250 kb on + strand, within CA264_16165 at 3764.250 kb on + strand, within CA264_16165 at 3764.274 kb on - strand, within CA264_16165
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 3,761,605 + CA264_16145 0.86 +0.3 3,761,686 + CA264_16145 0.88 +0.3 3,761,701 - CA264_16145 0.89 +0.1 3,761,832 - -1.6 3,761,970 - +0.9 3,762,056 - -0.9 3,762,068 + -4.7 3,762,069 - -0.7 3,762,078 - +0.3 3,762,084 - +0.4 3,762,151 + CA264_16150 0.26 +0.0 3,762,339 + -0.5 3,762,397 + -0.3 3,762,538 + -0.1 3,762,553 + -0.2 3,762,555 + -0.3 3,762,568 + +0.2 3,762,568 + +1.1 3,762,569 - -0.7 3,762,569 - -0.3 3,762,569 - -0.9 3,762,575 + -1.8 3,762,582 - +0.2 3,762,728 - CA264_16155 0.18 -0.3 3,762,773 + CA264_16155 0.25 -0.9 3,762,865 + CA264_16155 0.37 -0.3 3,762,887 - CA264_16155 0.40 +0.9 3,762,987 - CA264_16155 0.53 +0.5 3,763,065 - CA264_16155 0.64 -0.3 3,763,158 - CA264_16155 0.77 +0.8 3,763,207 - CA264_16155 0.83 -0.4 3,763,232 + CA264_16155 0.87 -0.0 3,763,315 - -0.8 3,763,453 + +0.1 3,763,548 + -0.4 3,763,576 - +0.3 3,763,579 + +0.2 3,763,579 + -0.6 3,763,932 + -0.2 3,763,933 - +0.1 3,763,959 - +0.7 3,764,014 + CA264_16165 0.15 +1.1 3,764,106 - CA264_16165 0.32 -0.2 3,764,107 + CA264_16165 0.32 -1.4 3,764,107 + CA264_16165 0.32 +0.1 3,764,107 + CA264_16165 0.32 -1.3 3,764,108 - CA264_16165 0.32 +0.2 3,764,108 - CA264_16165 0.32 +0.1 3,764,154 - CA264_16165 0.41 -0.8 3,764,250 + CA264_16165 0.58 +0.7 3,764,250 + CA264_16165 0.58 -0.4 3,764,274 - CA264_16165 0.62 +2.3
Or see this region's nucleotide sequence