Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15650

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15645 and CA264_15650 are separated by 123 nucleotidesCA264_15650 and CA264_15655 are separated by 113 nucleotidesCA264_15655 and CA264_15660 are separated by 134 nucleotides CA264_15645: CA264_15645 - ornithine--oxo-acid transaminase, at 3,656,517 to 3,657,758 _15645 CA264_15650: CA264_15650 - hypothetical protein, at 3,657,882 to 3,658,187 _15650 CA264_15655: CA264_15655 - hypothetical protein, at 3,658,301 to 3,658,504 _15655 CA264_15660: CA264_15660 - 50S ribosomal protein L28, at 3,658,639 to 3,658,878 _15660 Position (kb) 3657 3658 3659Strain fitness (log2 ratio) -1 0 1at 3656.885 kb on + strand, within CA264_15645at 3656.922 kb on - strand, within CA264_15645at 3656.984 kb on + strand, within CA264_15645at 3656.984 kb on + strand, within CA264_15645at 3656.984 kb on + strand, within CA264_15645at 3656.985 kb on - strand, within CA264_15645at 3656.985 kb on - strand, within CA264_15645at 3656.988 kb on + strand, within CA264_15645at 3656.988 kb on + strand, within CA264_15645at 3656.988 kb on + strand, within CA264_15645at 3656.989 kb on - strand, within CA264_15645at 3656.989 kb on - strand, within CA264_15645at 3656.989 kb on - strand, within CA264_15645at 3656.989 kb on - strand, within CA264_15645at 3656.989 kb on - strand, within CA264_15645at 3657.000 kb on + strand, within CA264_15645at 3657.010 kb on + strand, within CA264_15645at 3657.010 kb on + strand, within CA264_15645at 3657.011 kb on - strand, within CA264_15645at 3657.013 kb on + strand, within CA264_15645at 3657.227 kb on - strand, within CA264_15645at 3657.240 kb on - strand, within CA264_15645at 3657.241 kb on + strand, within CA264_15645at 3657.251 kb on + strand, within CA264_15645at 3657.251 kb on + strand, within CA264_15645at 3657.251 kb on + strand, within CA264_15645at 3657.253 kb on + strand, within CA264_15645at 3657.253 kb on + strand, within CA264_15645at 3657.254 kb on - strand, within CA264_15645at 3657.326 kb on + strand, within CA264_15645at 3657.342 kb on + strand, within CA264_15645at 3657.343 kb on - strand, within CA264_15645at 3657.437 kb on + strand, within CA264_15645at 3657.438 kb on - strand, within CA264_15645at 3657.463 kb on + strand, within CA264_15645at 3657.475 kb on + strand, within CA264_15645at 3657.475 kb on + strand, within CA264_15645at 3657.617 kb on - strand, within CA264_15645at 3657.619 kb on + strand, within CA264_15645at 3657.633 kb on + strand, within CA264_15645at 3657.688 kb on + strandat 3657.689 kb on - strandat 3657.693 kb on - strandat 3657.740 kb on + strandat 3657.741 kb on - strandat 3657.752 kb on + strandat 3657.758 kb on + strandat 3657.802 kb on + strandat 3657.847 kb on + strandat 3657.848 kb on - strandat 3657.852 kb on - strandat 3657.852 kb on - strandat 3657.938 kb on - strand, within CA264_15650at 3657.938 kb on - strand, within CA264_15650at 3657.946 kb on + strand, within CA264_15650at 3657.946 kb on + strand, within CA264_15650at 3657.947 kb on - strand, within CA264_15650at 3657.994 kb on + strand, within CA264_15650at 3657.995 kb on - strand, within CA264_15650at 3657.996 kb on + strand, within CA264_15650at 3658.167 kb on - strandat 3658.173 kb on - strandat 3658.177 kb on + strandat 3658.178 kb on - strandat 3658.188 kb on - strandat 3658.231 kb on + strandat 3658.231 kb on + strandat 3658.232 kb on - strandat 3658.238 kb on + strandat 3658.238 kb on + strandat 3658.257 kb on + strandat 3658.258 kb on - strandat 3658.853 kb on + strand, within CA264_15660at 3658.864 kb on + strandat 3658.864 kb on + strandat 3658.864 kb on + strandat 3658.876 kb on + strandat 3658.877 kb on - strandat 3658.966 kb on + strandat 3658.998 kb on + strandat 3659.088 kb on + strandat 3659.092 kb on + strandat 3659.119 kb on - strandat 3659.119 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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3,656,885 + CA264_15645 0.30 -0.4
3,656,922 - CA264_15645 0.33 +0.2
3,656,984 + CA264_15645 0.38 -0.4
3,656,984 + CA264_15645 0.38 +0.6
3,656,984 + CA264_15645 0.38 +0.2
3,656,985 - CA264_15645 0.38 -0.4
3,656,985 - CA264_15645 0.38 -0.4
3,656,988 + CA264_15645 0.38 -0.5
3,656,988 + CA264_15645 0.38 -1.0
3,656,988 + CA264_15645 0.38 -0.4
3,656,989 - CA264_15645 0.38 -0.1
3,656,989 - CA264_15645 0.38 +0.3
3,656,989 - CA264_15645 0.38 +0.6
3,656,989 - CA264_15645 0.38 +0.4
3,656,989 - CA264_15645 0.38 -0.1
3,657,000 + CA264_15645 0.39 -0.4
3,657,010 + CA264_15645 0.40 +0.3
3,657,010 + CA264_15645 0.40 +0.2
3,657,011 - CA264_15645 0.40 -0.2
3,657,013 + CA264_15645 0.40 +0.1
3,657,227 - CA264_15645 0.57 +0.5
3,657,240 - CA264_15645 0.58 -0.1
3,657,241 + CA264_15645 0.58 -0.6
3,657,251 + CA264_15645 0.59 +0.1
3,657,251 + CA264_15645 0.59 +0.2
3,657,251 + CA264_15645 0.59 -0.1
3,657,253 + CA264_15645 0.59 +1.7
3,657,253 + CA264_15645 0.59 -0.2
3,657,254 - CA264_15645 0.59 +0.0
3,657,326 + CA264_15645 0.65 -0.1
3,657,342 + CA264_15645 0.66 +0.6
3,657,343 - CA264_15645 0.67 -0.1
3,657,437 + CA264_15645 0.74 -0.1
3,657,438 - CA264_15645 0.74 -0.5
3,657,463 + CA264_15645 0.76 +0.1
3,657,475 + CA264_15645 0.77 +0.0
3,657,475 + CA264_15645 0.77 +0.3
3,657,617 - CA264_15645 0.89 -0.3
3,657,619 + CA264_15645 0.89 +0.4
3,657,633 + CA264_15645 0.90 +0.4
3,657,688 + +0.7
3,657,689 - +0.0
3,657,693 - -0.2
3,657,740 + -1.2
3,657,741 - -0.3
3,657,752 + +0.0
3,657,758 + -0.6
3,657,802 + -0.1
3,657,847 + +0.4
3,657,848 - +1.3
3,657,852 - -0.5
3,657,852 - -0.5
3,657,938 - CA264_15650 0.18 -1.0
3,657,938 - CA264_15650 0.18 -0.5
3,657,946 + CA264_15650 0.21 +0.5
3,657,946 + CA264_15650 0.21 -0.8
3,657,947 - CA264_15650 0.21 -0.1
3,657,994 + CA264_15650 0.37 -1.0
3,657,995 - CA264_15650 0.37 -0.9
3,657,996 + CA264_15650 0.37 +1.3
3,658,167 - -1.4
3,658,173 - -0.6
3,658,177 + -0.1
3,658,178 - -0.1
3,658,188 - -0.6
3,658,231 + -1.1
3,658,231 + +0.3
3,658,232 - +0.4
3,658,238 + -0.0
3,658,238 + +0.9
3,658,257 + -0.2
3,658,258 - +0.1
3,658,853 + CA264_15660 0.89 +0.5
3,658,864 + -1.3
3,658,864 + -0.4
3,658,864 + +1.3
3,658,876 + +0.4
3,658,877 - +1.0
3,658,966 + +0.5
3,658,998 + +0.7
3,659,088 + +0.9
3,659,092 + -0.9
3,659,119 - +0.1
3,659,119 - +0.5

Or see this region's nucleotide sequence