Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15645 and CA264_15650 are separated by 123 nucleotides CA264_15650 and CA264_15655 are separated by 113 nucleotides CA264_15655 and CA264_15660 are separated by 134 nucleotides
CA264_15645: CA264_15645 - ornithine--oxo-acid transaminase, at 3,656,517 to 3,657,758
_15645
CA264_15650: CA264_15650 - hypothetical protein, at 3,657,882 to 3,658,187
_15650
CA264_15655: CA264_15655 - hypothetical protein, at 3,658,301 to 3,658,504
_15655
CA264_15660: CA264_15660 - 50S ribosomal protein L28, at 3,658,639 to 3,658,878
_15660
Position (kb)
3657
3658
3659 Strain fitness (log2 ratio)
-1
0
1 at 3656.885 kb on + strand, within CA264_15645 at 3656.922 kb on - strand, within CA264_15645 at 3656.984 kb on + strand, within CA264_15645 at 3656.984 kb on + strand, within CA264_15645 at 3656.984 kb on + strand, within CA264_15645 at 3656.985 kb on - strand, within CA264_15645 at 3656.985 kb on - strand, within CA264_15645 at 3656.988 kb on + strand, within CA264_15645 at 3656.988 kb on + strand, within CA264_15645 at 3656.988 kb on + strand, within CA264_15645 at 3656.989 kb on - strand, within CA264_15645 at 3656.989 kb on - strand, within CA264_15645 at 3656.989 kb on - strand, within CA264_15645 at 3656.989 kb on - strand, within CA264_15645 at 3656.989 kb on - strand, within CA264_15645 at 3657.000 kb on + strand, within CA264_15645 at 3657.010 kb on + strand, within CA264_15645 at 3657.010 kb on + strand, within CA264_15645 at 3657.011 kb on - strand, within CA264_15645 at 3657.013 kb on + strand, within CA264_15645 at 3657.227 kb on - strand, within CA264_15645 at 3657.240 kb on - strand, within CA264_15645 at 3657.241 kb on + strand, within CA264_15645 at 3657.251 kb on + strand, within CA264_15645 at 3657.251 kb on + strand, within CA264_15645 at 3657.251 kb on + strand, within CA264_15645 at 3657.253 kb on + strand, within CA264_15645 at 3657.253 kb on + strand, within CA264_15645 at 3657.254 kb on - strand, within CA264_15645 at 3657.326 kb on + strand, within CA264_15645 at 3657.342 kb on + strand, within CA264_15645 at 3657.343 kb on - strand, within CA264_15645 at 3657.437 kb on + strand, within CA264_15645 at 3657.438 kb on - strand, within CA264_15645 at 3657.463 kb on + strand, within CA264_15645 at 3657.475 kb on + strand, within CA264_15645 at 3657.475 kb on + strand, within CA264_15645 at 3657.617 kb on - strand, within CA264_15645 at 3657.619 kb on + strand, within CA264_15645 at 3657.633 kb on + strand, within CA264_15645 at 3657.688 kb on + strand at 3657.689 kb on - strand at 3657.693 kb on - strand at 3657.740 kb on + strand at 3657.741 kb on - strand at 3657.752 kb on + strand at 3657.758 kb on + strand at 3657.802 kb on + strand at 3657.847 kb on + strand at 3657.848 kb on - strand at 3657.852 kb on - strand at 3657.852 kb on - strand at 3657.938 kb on - strand, within CA264_15650 at 3657.938 kb on - strand, within CA264_15650 at 3657.946 kb on + strand, within CA264_15650 at 3657.946 kb on + strand, within CA264_15650 at 3657.947 kb on - strand, within CA264_15650 at 3657.994 kb on + strand, within CA264_15650 at 3657.995 kb on - strand, within CA264_15650 at 3657.996 kb on + strand, within CA264_15650 at 3658.167 kb on - strand at 3658.173 kb on - strand at 3658.177 kb on + strand at 3658.178 kb on - strand at 3658.188 kb on - strand at 3658.231 kb on + strand at 3658.231 kb on + strand at 3658.232 kb on - strand at 3658.238 kb on + strand at 3658.238 kb on + strand at 3658.257 kb on + strand at 3658.258 kb on - strand at 3658.853 kb on + strand, within CA264_15660 at 3658.864 kb on + strand at 3658.864 kb on + strand at 3658.864 kb on + strand at 3658.876 kb on + strand at 3658.877 kb on - strand at 3658.966 kb on + strand at 3658.998 kb on + strand at 3659.088 kb on + strand at 3659.092 kb on + strand at 3659.119 kb on - strand at 3659.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 3,656,885 + CA264_15645 0.30 -0.4 3,656,922 - CA264_15645 0.33 +0.2 3,656,984 + CA264_15645 0.38 -0.4 3,656,984 + CA264_15645 0.38 +0.6 3,656,984 + CA264_15645 0.38 +0.2 3,656,985 - CA264_15645 0.38 -0.4 3,656,985 - CA264_15645 0.38 -0.4 3,656,988 + CA264_15645 0.38 -0.5 3,656,988 + CA264_15645 0.38 -1.0 3,656,988 + CA264_15645 0.38 -0.4 3,656,989 - CA264_15645 0.38 -0.1 3,656,989 - CA264_15645 0.38 +0.3 3,656,989 - CA264_15645 0.38 +0.6 3,656,989 - CA264_15645 0.38 +0.4 3,656,989 - CA264_15645 0.38 -0.1 3,657,000 + CA264_15645 0.39 -0.4 3,657,010 + CA264_15645 0.40 +0.3 3,657,010 + CA264_15645 0.40 +0.2 3,657,011 - CA264_15645 0.40 -0.2 3,657,013 + CA264_15645 0.40 +0.1 3,657,227 - CA264_15645 0.57 +0.5 3,657,240 - CA264_15645 0.58 -0.1 3,657,241 + CA264_15645 0.58 -0.6 3,657,251 + CA264_15645 0.59 +0.1 3,657,251 + CA264_15645 0.59 +0.2 3,657,251 + CA264_15645 0.59 -0.1 3,657,253 + CA264_15645 0.59 +1.7 3,657,253 + CA264_15645 0.59 -0.2 3,657,254 - CA264_15645 0.59 +0.0 3,657,326 + CA264_15645 0.65 -0.1 3,657,342 + CA264_15645 0.66 +0.6 3,657,343 - CA264_15645 0.67 -0.1 3,657,437 + CA264_15645 0.74 -0.1 3,657,438 - CA264_15645 0.74 -0.5 3,657,463 + CA264_15645 0.76 +0.1 3,657,475 + CA264_15645 0.77 +0.0 3,657,475 + CA264_15645 0.77 +0.3 3,657,617 - CA264_15645 0.89 -0.3 3,657,619 + CA264_15645 0.89 +0.4 3,657,633 + CA264_15645 0.90 +0.4 3,657,688 + +0.7 3,657,689 - +0.0 3,657,693 - -0.2 3,657,740 + -1.2 3,657,741 - -0.3 3,657,752 + +0.0 3,657,758 + -0.6 3,657,802 + -0.1 3,657,847 + +0.4 3,657,848 - +1.3 3,657,852 - -0.5 3,657,852 - -0.5 3,657,938 - CA264_15650 0.18 -1.0 3,657,938 - CA264_15650 0.18 -0.5 3,657,946 + CA264_15650 0.21 +0.5 3,657,946 + CA264_15650 0.21 -0.8 3,657,947 - CA264_15650 0.21 -0.1 3,657,994 + CA264_15650 0.37 -1.0 3,657,995 - CA264_15650 0.37 -0.9 3,657,996 + CA264_15650 0.37 +1.3 3,658,167 - -1.4 3,658,173 - -0.6 3,658,177 + -0.1 3,658,178 - -0.1 3,658,188 - -0.6 3,658,231 + -1.1 3,658,231 + +0.3 3,658,232 - +0.4 3,658,238 + -0.0 3,658,238 + +0.9 3,658,257 + -0.2 3,658,258 - +0.1 3,658,853 + CA264_15660 0.89 +0.5 3,658,864 + -1.3 3,658,864 + -0.4 3,658,864 + +1.3 3,658,876 + +0.4 3,658,877 - +1.0 3,658,966 + +0.5 3,658,998 + +0.7 3,659,088 + +0.9 3,659,092 + -0.9 3,659,119 - +0.1 3,659,119 - +0.5
Or see this region's nucleotide sequence