Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15225 and CA264_15230 are separated by 65 nucleotides CA264_15230 and CA264_15235 are separated by 46 nucleotides CA264_15235 and CA264_15240 are separated by 116 nucleotides
CA264_15225: CA264_15225 - di-trans,poly-cis-decaprenylcistransferase, at 3,567,240 to 3,567,977
_15225
CA264_15230: CA264_15230 - hypothetical protein, at 3,568,043 to 3,568,810
_15230
CA264_15235: CA264_15235 - hypothetical protein, at 3,568,857 to 3,569,849
_15235
CA264_15240: CA264_15240 - NAD kinase, at 3,569,966 to 3,570,853
_15240
Position (kb)
3568
3569
3570 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3567.948 kb on + strand at 3567.957 kb on + strand at 3568.044 kb on + strand at 3568.044 kb on + strand at 3568.045 kb on - strand at 3568.115 kb on + strand at 3568.131 kb on + strand, within CA264_15230 at 3568.161 kb on + strand, within CA264_15230 at 3568.186 kb on - strand, within CA264_15230 at 3568.186 kb on - strand, within CA264_15230 at 3568.306 kb on - strand, within CA264_15230 at 3568.350 kb on + strand, within CA264_15230 at 3568.350 kb on + strand, within CA264_15230 at 3568.350 kb on + strand, within CA264_15230 at 3568.367 kb on - strand, within CA264_15230 at 3568.413 kb on + strand, within CA264_15230 at 3568.413 kb on + strand, within CA264_15230 at 3568.414 kb on - strand, within CA264_15230 at 3568.416 kb on + strand, within CA264_15230 at 3568.417 kb on - strand, within CA264_15230 at 3568.485 kb on + strand, within CA264_15230 at 3568.489 kb on + strand, within CA264_15230 at 3568.613 kb on + strand, within CA264_15230 at 3568.627 kb on + strand, within CA264_15230 at 3568.679 kb on + strand, within CA264_15230 at 3568.680 kb on - strand, within CA264_15230 at 3568.692 kb on - strand, within CA264_15230 at 3568.757 kb on + strand at 3568.777 kb on + strand at 3568.812 kb on + strand at 3568.812 kb on + strand at 3568.828 kb on - strand at 3568.855 kb on + strand at 3568.856 kb on - strand at 3568.862 kb on + strand at 3568.895 kb on + strand at 3568.924 kb on + strand at 3568.925 kb on - strand at 3568.925 kb on - strand at 3568.925 kb on - strand at 3568.973 kb on - strand at 3568.991 kb on - strand, within CA264_15235 at 3568.991 kb on - strand, within CA264_15235 at 3568.991 kb on - strand, within CA264_15235 at 3568.991 kb on - strand, within CA264_15235 at 3568.991 kb on - strand, within CA264_15235 at 3568.996 kb on - strand, within CA264_15235 at 3568.996 kb on - strand, within CA264_15235 at 3569.010 kb on - strand, within CA264_15235 at 3569.097 kb on + strand, within CA264_15235 at 3569.097 kb on + strand, within CA264_15235 at 3569.100 kb on - strand, within CA264_15235 at 3569.123 kb on + strand, within CA264_15235 at 3569.127 kb on + strand, within CA264_15235 at 3569.127 kb on + strand, within CA264_15235 at 3569.128 kb on - strand, within CA264_15235 at 3569.128 kb on - strand, within CA264_15235 at 3569.166 kb on + strand, within CA264_15235 at 3569.166 kb on + strand, within CA264_15235 at 3569.177 kb on + strand, within CA264_15235 at 3569.189 kb on - strand, within CA264_15235 at 3569.201 kb on + strand, within CA264_15235 at 3569.203 kb on + strand, within CA264_15235 at 3569.203 kb on + strand, within CA264_15235 at 3569.239 kb on - strand, within CA264_15235 at 3569.248 kb on + strand, within CA264_15235 at 3569.311 kb on + strand, within CA264_15235 at 3569.312 kb on - strand, within CA264_15235 at 3569.328 kb on - strand, within CA264_15235 at 3569.381 kb on + strand, within CA264_15235 at 3569.467 kb on - strand, within CA264_15235 at 3569.632 kb on + strand, within CA264_15235 at 3569.637 kb on - strand, within CA264_15235 at 3569.637 kb on - strand, within CA264_15235 at 3569.637 kb on - strand, within CA264_15235 at 3569.639 kb on - strand, within CA264_15235 at 3569.639 kb on - strand, within CA264_15235 at 3569.643 kb on - strand, within CA264_15235 at 3569.753 kb on - strand at 3569.789 kb on + strand at 3569.790 kb on - strand at 3569.790 kb on - strand at 3569.834 kb on + strand at 3569.861 kb on - strand at 3569.921 kb on - strand at 3569.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 3,567,948 + +1.0 3,567,957 + -0.5 3,568,044 + +1.3 3,568,044 + +0.3 3,568,045 - -0.1 3,568,115 + -1.1 3,568,131 + CA264_15230 0.11 +0.3 3,568,161 + CA264_15230 0.15 -0.5 3,568,186 - CA264_15230 0.19 -2.6 3,568,186 - CA264_15230 0.19 -0.6 3,568,306 - CA264_15230 0.34 -1.4 3,568,350 + CA264_15230 0.40 -0.8 3,568,350 + CA264_15230 0.40 -0.2 3,568,350 + CA264_15230 0.40 -0.9 3,568,367 - CA264_15230 0.42 -1.0 3,568,413 + CA264_15230 0.48 -1.4 3,568,413 + CA264_15230 0.48 -0.1 3,568,414 - CA264_15230 0.48 -0.7 3,568,416 + CA264_15230 0.49 -0.1 3,568,417 - CA264_15230 0.49 -1.7 3,568,485 + CA264_15230 0.58 -1.4 3,568,489 + CA264_15230 0.58 -1.4 3,568,613 + CA264_15230 0.74 -1.1 3,568,627 + CA264_15230 0.76 -0.2 3,568,679 + CA264_15230 0.83 +0.0 3,568,680 - CA264_15230 0.83 -2.3 3,568,692 - CA264_15230 0.85 -1.0 3,568,757 + -0.1 3,568,777 + +1.0 3,568,812 + -0.6 3,568,812 + +0.9 3,568,828 - -0.1 3,568,855 + +1.4 3,568,856 - +0.9 3,568,862 + +0.3 3,568,895 + +2.9 3,568,924 + -0.2 3,568,925 - +0.5 3,568,925 - +0.6 3,568,925 - +0.1 3,568,973 - +1.5 3,568,991 - CA264_15235 0.13 +0.9 3,568,991 - CA264_15235 0.13 +0.4 3,568,991 - CA264_15235 0.13 -0.1 3,568,991 - CA264_15235 0.13 +0.0 3,568,991 - CA264_15235 0.13 +0.2 3,568,996 - CA264_15235 0.14 +0.3 3,568,996 - CA264_15235 0.14 +0.5 3,569,010 - CA264_15235 0.15 +0.8 3,569,097 + CA264_15235 0.24 +0.5 3,569,097 + CA264_15235 0.24 -0.5 3,569,100 - CA264_15235 0.24 +0.0 3,569,123 + CA264_15235 0.27 +0.9 3,569,127 + CA264_15235 0.27 -1.4 3,569,127 + CA264_15235 0.27 +1.3 3,569,128 - CA264_15235 0.27 +0.3 3,569,128 - CA264_15235 0.27 +0.5 3,569,166 + CA264_15235 0.31 +0.0 3,569,166 + CA264_15235 0.31 +0.8 3,569,177 + CA264_15235 0.32 +1.1 3,569,189 - CA264_15235 0.33 +0.3 3,569,201 + CA264_15235 0.35 +0.5 3,569,203 + CA264_15235 0.35 +1.0 3,569,203 + CA264_15235 0.35 +0.2 3,569,239 - CA264_15235 0.38 +1.5 3,569,248 + CA264_15235 0.39 +1.3 3,569,311 + CA264_15235 0.46 -1.1 3,569,312 - CA264_15235 0.46 +0.0 3,569,328 - CA264_15235 0.47 -0.5 3,569,381 + CA264_15235 0.53 +1.0 3,569,467 - CA264_15235 0.61 -0.3 3,569,632 + CA264_15235 0.78 +2.3 3,569,637 - CA264_15235 0.79 +0.6 3,569,637 - CA264_15235 0.79 +0.3 3,569,637 - CA264_15235 0.79 +1.1 3,569,639 - CA264_15235 0.79 +1.6 3,569,639 - CA264_15235 0.79 +0.7 3,569,643 - CA264_15235 0.79 +0.7 3,569,753 - +0.7 3,569,789 + +1.0 3,569,790 - +1.8 3,569,790 - +0.3 3,569,834 + -0.4 3,569,861 - +0.6 3,569,921 - -0.0 3,569,928 - -0.1
Or see this region's nucleotide sequence