Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14965 and CA264_14970 are separated by 92 nucleotides CA264_14970 and CA264_14975 are separated by 69 nucleotides CA264_14975 and CA264_14980 are separated by 73 nucleotides
CA264_14965: CA264_14965 - glycosyltransferase WbuB, at 3,512,320 to 3,513,516
_14965
CA264_14970: CA264_14970 - gliding motility lipoprotein GldB, at 3,513,609 to 3,514,613
_14970
CA264_14975: CA264_14975 - hypothetical protein, at 3,514,683 to 3,515,360
_14975
CA264_14980: CA264_14980 - ribonuclease E/G, at 3,515,434 to 3,517,032
_14980
Position (kb)
3513
3514
3515 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3512.640 kb on + strand, within CA264_14965 at 3512.652 kb on + strand, within CA264_14965 at 3512.661 kb on + strand, within CA264_14965 at 3512.661 kb on + strand, within CA264_14965 at 3512.662 kb on - strand, within CA264_14965 at 3512.662 kb on - strand, within CA264_14965 at 3512.741 kb on + strand, within CA264_14965 at 3512.772 kb on + strand, within CA264_14965 at 3512.773 kb on - strand, within CA264_14965 at 3512.773 kb on - strand, within CA264_14965 at 3512.773 kb on - strand, within CA264_14965 at 3512.778 kb on + strand, within CA264_14965 at 3512.809 kb on + strand, within CA264_14965 at 3512.809 kb on + strand, within CA264_14965 at 3512.818 kb on + strand, within CA264_14965 at 3512.818 kb on + strand, within CA264_14965 at 3512.818 kb on + strand, within CA264_14965 at 3512.819 kb on - strand, within CA264_14965 at 3512.819 kb on - strand, within CA264_14965 at 3512.819 kb on - strand, within CA264_14965 at 3512.820 kb on + strand, within CA264_14965 at 3512.820 kb on + strand, within CA264_14965 at 3512.821 kb on - strand, within CA264_14965 at 3512.837 kb on + strand, within CA264_14965 at 3512.849 kb on + strand, within CA264_14965 at 3512.981 kb on - strand, within CA264_14965 at 3512.981 kb on - strand, within CA264_14965 at 3513.042 kb on - strand, within CA264_14965 at 3513.232 kb on - strand, within CA264_14965 at 3513.253 kb on - strand, within CA264_14965 at 3513.317 kb on + strand, within CA264_14965 at 3513.452 kb on + strand at 3513.579 kb on - strand at 3513.579 kb on - strand at 3513.579 kb on - strand at 3513.630 kb on - strand at 3513.631 kb on + strand at 3513.675 kb on + strand at 3513.675 kb on + strand at 3513.834 kb on + strand, within CA264_14970 at 3513.849 kb on + strand, within CA264_14970 at 3513.879 kb on - strand, within CA264_14970 at 3513.917 kb on + strand, within CA264_14970 at 3513.917 kb on + strand, within CA264_14970 at 3513.917 kb on + strand, within CA264_14970 at 3513.917 kb on + strand, within CA264_14970 at 3513.918 kb on - strand, within CA264_14970 at 3513.918 kb on - strand, within CA264_14970 at 3513.922 kb on + strand, within CA264_14970 at 3513.923 kb on - strand, within CA264_14970 at 3513.962 kb on - strand, within CA264_14970 at 3513.962 kb on - strand, within CA264_14970 at 3513.964 kb on + strand, within CA264_14970 at 3513.975 kb on + strand, within CA264_14970 at 3514.094 kb on - strand, within CA264_14970 at 3514.099 kb on + strand, within CA264_14970 at 3514.115 kb on - strand, within CA264_14970 at 3514.118 kb on + strand, within CA264_14970 at 3514.118 kb on + strand, within CA264_14970 at 3514.247 kb on - strand, within CA264_14970 at 3514.254 kb on + strand, within CA264_14970 at 3514.254 kb on + strand, within CA264_14970 at 3514.255 kb on - strand, within CA264_14970 at 3514.397 kb on - strand, within CA264_14970 at 3514.397 kb on - strand, within CA264_14970 at 3514.397 kb on - strand, within CA264_14970 at 3514.397 kb on - strand, within CA264_14970 at 3514.401 kb on - strand, within CA264_14970 at 3514.401 kb on - strand, within CA264_14970 at 3514.594 kb on - strand at 3514.595 kb on + strand at 3514.599 kb on + strand at 3514.630 kb on - strand at 3514.656 kb on - strand at 3514.656 kb on - strand at 3514.656 kb on - strand at 3514.656 kb on - strand at 3514.665 kb on + strand at 3514.665 kb on + strand at 3514.666 kb on - strand at 3514.666 kb on - strand at 3514.666 kb on - strand at 3514.672 kb on + strand at 3514.750 kb on + strand at 3514.750 kb on + strand at 3514.751 kb on - strand, within CA264_14975 at 3514.812 kb on + strand, within CA264_14975 at 3514.812 kb on + strand, within CA264_14975 at 3514.887 kb on + strand, within CA264_14975 at 3514.888 kb on - strand, within CA264_14975 at 3514.938 kb on + strand, within CA264_14975 at 3514.945 kb on - strand, within CA264_14975 at 3514.945 kb on - strand, within CA264_14975 at 3514.945 kb on - strand, within CA264_14975 at 3515.006 kb on - strand, within CA264_14975 at 3515.010 kb on + strand, within CA264_14975 at 3515.010 kb on + strand, within CA264_14975 at 3515.011 kb on - strand, within CA264_14975 at 3515.170 kb on + strand, within CA264_14975 at 3515.251 kb on - strand, within CA264_14975 at 3515.436 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 3,512,640 + CA264_14965 0.27 +0.6 3,512,652 + CA264_14965 0.28 -0.5 3,512,661 + CA264_14965 0.28 -0.8 3,512,661 + CA264_14965 0.28 +1.0 3,512,662 - CA264_14965 0.29 -0.8 3,512,662 - CA264_14965 0.29 -0.3 3,512,741 + CA264_14965 0.35 +0.2 3,512,772 + CA264_14965 0.38 -0.8 3,512,773 - CA264_14965 0.38 -0.3 3,512,773 - CA264_14965 0.38 -0.5 3,512,773 - CA264_14965 0.38 +0.1 3,512,778 + CA264_14965 0.38 -0.5 3,512,809 + CA264_14965 0.41 -0.9 3,512,809 + CA264_14965 0.41 -0.4 3,512,818 + CA264_14965 0.42 -0.7 3,512,818 + CA264_14965 0.42 -0.3 3,512,818 + CA264_14965 0.42 +1.2 3,512,819 - CA264_14965 0.42 -0.6 3,512,819 - CA264_14965 0.42 +0.0 3,512,819 - CA264_14965 0.42 -2.1 3,512,820 + CA264_14965 0.42 -0.2 3,512,820 + CA264_14965 0.42 -0.0 3,512,821 - CA264_14965 0.42 -0.1 3,512,837 + CA264_14965 0.43 -1.1 3,512,849 + CA264_14965 0.44 +1.1 3,512,981 - CA264_14965 0.55 -0.4 3,512,981 - CA264_14965 0.55 -0.3 3,513,042 - CA264_14965 0.60 -1.8 3,513,232 - CA264_14965 0.76 -0.4 3,513,253 - CA264_14965 0.78 -0.2 3,513,317 + CA264_14965 0.83 -0.6 3,513,452 + +0.7 3,513,579 - +0.9 3,513,579 - -0.8 3,513,579 - -0.5 3,513,630 - -2.3 3,513,631 + -1.6 3,513,675 + +0.8 3,513,675 + +0.6 3,513,834 + CA264_14970 0.22 -0.7 3,513,849 + CA264_14970 0.24 +1.4 3,513,879 - CA264_14970 0.27 -0.8 3,513,917 + CA264_14970 0.31 -2.5 3,513,917 + CA264_14970 0.31 +1.1 3,513,917 + CA264_14970 0.31 -1.8 3,513,917 + CA264_14970 0.31 -0.2 3,513,918 - CA264_14970 0.31 -1.5 3,513,918 - CA264_14970 0.31 -1.8 3,513,922 + CA264_14970 0.31 -1.1 3,513,923 - CA264_14970 0.31 -0.6 3,513,962 - CA264_14970 0.35 -1.4 3,513,962 - CA264_14970 0.35 -0.0 3,513,964 + CA264_14970 0.35 -1.0 3,513,975 + CA264_14970 0.36 -1.8 3,514,094 - CA264_14970 0.48 -0.3 3,514,099 + CA264_14970 0.49 -0.2 3,514,115 - CA264_14970 0.50 -2.6 3,514,118 + CA264_14970 0.51 -0.8 3,514,118 + CA264_14970 0.51 -2.8 3,514,247 - CA264_14970 0.63 +0.5 3,514,254 + CA264_14970 0.64 -0.5 3,514,254 + CA264_14970 0.64 -0.7 3,514,255 - CA264_14970 0.64 -3.3 3,514,397 - CA264_14970 0.78 -1.8 3,514,397 - CA264_14970 0.78 -1.6 3,514,397 - CA264_14970 0.78 -0.7 3,514,397 - CA264_14970 0.78 -1.9 3,514,401 - CA264_14970 0.79 -2.1 3,514,401 - CA264_14970 0.79 -3.3 3,514,594 - +0.4 3,514,595 + -1.9 3,514,599 + -0.2 3,514,630 - +0.5 3,514,656 - -0.8 3,514,656 - +0.8 3,514,656 - -0.2 3,514,656 - -0.3 3,514,665 + -0.6 3,514,665 + +0.4 3,514,666 - -0.2 3,514,666 - -0.5 3,514,666 - -0.5 3,514,672 + +0.5 3,514,750 + +0.1 3,514,750 + +0.9 3,514,751 - CA264_14975 0.10 +0.3 3,514,812 + CA264_14975 0.19 +0.6 3,514,812 + CA264_14975 0.19 +0.2 3,514,887 + CA264_14975 0.30 +0.4 3,514,888 - CA264_14975 0.30 -0.8 3,514,938 + CA264_14975 0.38 +0.2 3,514,945 - CA264_14975 0.39 -0.0 3,514,945 - CA264_14975 0.39 +0.5 3,514,945 - CA264_14975 0.39 -0.7 3,515,006 - CA264_14975 0.48 +1.2 3,515,010 + CA264_14975 0.48 +0.2 3,515,010 + CA264_14975 0.48 +0.2 3,515,011 - CA264_14975 0.48 -1.2 3,515,170 + CA264_14975 0.72 -1.1 3,515,251 - CA264_14975 0.84 -1.0 3,515,436 - +1.7
Or see this region's nucleotide sequence