Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12315 and CA264_12320 are separated by 41 nucleotides CA264_12320 and CA264_12325 are separated by 184 nucleotides
CA264_12315: CA264_12315 - fumarylacetoacetase, at 2,869,068 to 2,870,339
_12315
CA264_12320: CA264_12320 - flavin reductase, at 2,870,381 to 2,871,286
_12320
CA264_12325: CA264_12325 - polysaccharide biosynthesis protein, at 2,871,471 to 2,873,402
_12325
Position (kb)
2870
2871
2872 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2869.448 kb on - strand, within CA264_12315 at 2869.524 kb on - strand, within CA264_12315 at 2869.567 kb on - strand, within CA264_12315 at 2869.609 kb on + strand, within CA264_12315 at 2869.610 kb on - strand, within CA264_12315 at 2869.763 kb on + strand, within CA264_12315 at 2869.822 kb on - strand, within CA264_12315 at 2869.913 kb on - strand, within CA264_12315 at 2869.948 kb on - strand, within CA264_12315 at 2869.969 kb on - strand, within CA264_12315 at 2869.975 kb on - strand, within CA264_12315 at 2870.044 kb on - strand, within CA264_12315 at 2870.052 kb on - strand, within CA264_12315 at 2870.124 kb on + strand, within CA264_12315 at 2870.124 kb on + strand, within CA264_12315 at 2870.183 kb on + strand, within CA264_12315 at 2870.338 kb on - strand at 2870.369 kb on + strand at 2870.436 kb on + strand at 2870.436 kb on + strand at 2870.528 kb on - strand, within CA264_12320 at 2870.686 kb on + strand, within CA264_12320 at 2870.687 kb on - strand, within CA264_12320 at 2870.687 kb on - strand, within CA264_12320 at 2870.693 kb on + strand, within CA264_12320 at 2870.693 kb on + strand, within CA264_12320 at 2870.717 kb on - strand, within CA264_12320 at 2870.918 kb on + strand, within CA264_12320 at 2871.018 kb on + strand, within CA264_12320 at 2871.155 kb on + strand, within CA264_12320 at 2871.156 kb on - strand, within CA264_12320 at 2871.171 kb on - strand, within CA264_12320 at 2871.171 kb on - strand, within CA264_12320 at 2871.171 kb on - strand, within CA264_12320 at 2871.285 kb on - strand at 2871.345 kb on + strand at 2871.345 kb on + strand at 2871.345 kb on + strand at 2871.399 kb on - strand at 2871.399 kb on - strand at 2871.399 kb on - strand at 2871.406 kb on + strand at 2871.407 kb on - strand at 2871.407 kb on - strand at 2871.408 kb on + strand at 2871.448 kb on + strand at 2871.448 kb on + strand at 2871.449 kb on - strand at 2871.449 kb on - strand at 2871.450 kb on + strand at 2871.456 kb on + strand at 2871.456 kb on + strand at 2871.456 kb on + strand at 2871.456 kb on + strand at 2871.456 kb on + strand at 2871.456 kb on + strand at 2871.456 kb on + strand at 2871.457 kb on - strand at 2871.472 kb on + strand at 2871.473 kb on - strand at 2871.478 kb on - strand at 2871.478 kb on - strand at 2871.521 kb on - strand at 2871.521 kb on - strand at 2871.597 kb on + strand at 2871.597 kb on + strand at 2871.598 kb on - strand at 2871.619 kb on + strand at 2871.619 kb on + strand at 2871.626 kb on - strand at 2871.745 kb on - strand, within CA264_12325 at 2871.751 kb on - strand, within CA264_12325 at 2871.755 kb on + strand, within CA264_12325 at 2871.762 kb on - strand, within CA264_12325 at 2871.785 kb on + strand, within CA264_12325 at 2871.830 kb on + strand, within CA264_12325 at 2871.899 kb on + strand, within CA264_12325 at 2871.900 kb on - strand, within CA264_12325 at 2871.900 kb on - strand, within CA264_12325 at 2871.912 kb on + strand, within CA264_12325 at 2872.098 kb on + strand, within CA264_12325 at 2872.102 kb on + strand, within CA264_12325 at 2872.197 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 2,869,448 - CA264_12315 0.30 -0.9 2,869,524 - CA264_12315 0.36 -0.6 2,869,567 - CA264_12315 0.39 -0.6 2,869,609 + CA264_12315 0.43 -0.7 2,869,610 - CA264_12315 0.43 -0.4 2,869,763 + CA264_12315 0.55 -0.6 2,869,822 - CA264_12315 0.59 -0.4 2,869,913 - CA264_12315 0.66 +0.0 2,869,948 - CA264_12315 0.69 +1.9 2,869,969 - CA264_12315 0.71 -1.0 2,869,975 - CA264_12315 0.71 -1.2 2,870,044 - CA264_12315 0.77 -1.4 2,870,052 - CA264_12315 0.77 -0.2 2,870,124 + CA264_12315 0.83 +0.5 2,870,124 + CA264_12315 0.83 +1.2 2,870,183 + CA264_12315 0.88 +0.0 2,870,338 - -0.2 2,870,369 + +0.1 2,870,436 + -0.6 2,870,436 + -1.9 2,870,528 - CA264_12320 0.16 -0.1 2,870,686 + CA264_12320 0.34 -0.7 2,870,687 - CA264_12320 0.34 -0.6 2,870,687 - CA264_12320 0.34 +1.2 2,870,693 + CA264_12320 0.34 +0.1 2,870,693 + CA264_12320 0.34 +1.6 2,870,717 - CA264_12320 0.37 -0.9 2,870,918 + CA264_12320 0.59 -0.8 2,871,018 + CA264_12320 0.70 -0.6 2,871,155 + CA264_12320 0.85 -1.6 2,871,156 - CA264_12320 0.86 +0.6 2,871,171 - CA264_12320 0.87 -1.2 2,871,171 - CA264_12320 0.87 -0.6 2,871,171 - CA264_12320 0.87 +0.2 2,871,285 - -0.1 2,871,345 + -0.3 2,871,345 + -1.1 2,871,345 + -1.6 2,871,399 - +0.3 2,871,399 - +0.8 2,871,399 - +0.6 2,871,406 + -0.2 2,871,407 - +0.9 2,871,407 - +0.1 2,871,408 + -0.3 2,871,448 + -0.2 2,871,448 + +0.3 2,871,449 - -0.8 2,871,449 - +0.3 2,871,450 + -0.6 2,871,456 + +1.7 2,871,456 + +0.3 2,871,456 + -0.2 2,871,456 + +0.4 2,871,456 + -0.5 2,871,456 + -0.4 2,871,456 + -0.1 2,871,457 - -0.0 2,871,472 + -2.7 2,871,473 - -1.2 2,871,478 - -0.5 2,871,478 - -0.5 2,871,521 - -0.3 2,871,521 - -0.7 2,871,597 + -1.3 2,871,597 + -0.8 2,871,598 - -1.3 2,871,619 + -0.1 2,871,619 + -0.6 2,871,626 - +1.0 2,871,745 - CA264_12325 0.14 -0.0 2,871,751 - CA264_12325 0.14 +0.6 2,871,755 + CA264_12325 0.15 -1.8 2,871,762 - CA264_12325 0.15 -2.9 2,871,785 + CA264_12325 0.16 +0.1 2,871,830 + CA264_12325 0.19 +1.1 2,871,899 + CA264_12325 0.22 -0.7 2,871,900 - CA264_12325 0.22 +1.0 2,871,900 - CA264_12325 0.22 +0.2 2,871,912 + CA264_12325 0.23 -0.7 2,872,098 + CA264_12325 0.32 +0.8 2,872,102 + CA264_12325 0.33 +0.4 2,872,197 - +1.0
Or see this region's nucleotide sequence