Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11780 and CA264_11785 are separated by 68 nucleotides CA264_11785 and CA264_11790 are separated by 121 nucleotides CA264_11790 and CA264_11795 are separated by 348 nucleotides CA264_11795 and CA264_11800 overlap by 4 nucleotides
CA264_11780: CA264_11780 - tRNA-Arg, at 2,745,477 to 2,745,550
_11780
CA264_11785: CA264_11785 - tRNA-Pro, at 2,745,619 to 2,745,695
_11785
CA264_11790: CA264_11790 - tRNA-Ser, at 2,745,817 to 2,745,903
_11790
CA264_11795: CA264_11795 - aerotolerance regulator BatB, at 2,746,252 to 2,747,223
_11795
CA264_11800: CA264_11800 - aerotolerance protein, at 2,747,220 to 2,748,176
_11800
Position (kb)
2746
2747
2748 Strain fitness (log2 ratio)
-1
0
1
2 at 2745.273 kb on - strand at 2745.273 kb on - strand at 2745.277 kb on + strand at 2745.277 kb on + strand at 2745.282 kb on + strand at 2745.282 kb on + strand at 2745.303 kb on + strand at 2745.303 kb on + strand at 2745.303 kb on + strand at 2745.309 kb on + strand at 2745.309 kb on + strand at 2745.309 kb on + strand at 2745.315 kb on + strand at 2745.315 kb on + strand at 2745.812 kb on + strand at 2745.812 kb on + strand at 2745.813 kb on - strand at 2746.031 kb on - strand at 2746.037 kb on - strand at 2746.100 kb on + strand at 2746.101 kb on - strand at 2746.169 kb on - strand at 2746.169 kb on - strand at 2746.190 kb on + strand at 2746.190 kb on + strand at 2746.190 kb on + strand at 2746.191 kb on - strand at 2746.211 kb on + strand at 2746.211 kb on + strand at 2746.231 kb on + strand at 2746.240 kb on + strand at 2746.240 kb on + strand at 2746.241 kb on - strand at 2746.241 kb on - strand at 2746.325 kb on - strand at 2746.360 kb on - strand, within CA264_11795 at 2746.360 kb on - strand, within CA264_11795 at 2746.409 kb on - strand, within CA264_11795 at 2746.409 kb on - strand, within CA264_11795 at 2746.409 kb on - strand, within CA264_11795 at 2746.414 kb on - strand, within CA264_11795 at 2746.414 kb on - strand, within CA264_11795 at 2746.470 kb on - strand, within CA264_11795 at 2746.894 kb on + strand, within CA264_11795 at 2746.896 kb on + strand, within CA264_11795 at 2747.003 kb on + strand, within CA264_11795 at 2747.003 kb on + strand, within CA264_11795 at 2747.003 kb on + strand, within CA264_11795 at 2747.004 kb on - strand, within CA264_11795 at 2747.004 kb on - strand, within CA264_11795 at 2747.004 kb on - strand, within CA264_11795 at 2747.035 kb on + strand, within CA264_11795 at 2747.092 kb on - strand, within CA264_11795 at 2747.092 kb on - strand, within CA264_11795 at 2747.092 kb on - strand, within CA264_11795 at 2747.126 kb on + strand at 2747.147 kb on - strand at 2747.153 kb on - strand at 2747.252 kb on + strand at 2747.338 kb on - strand, within CA264_11800 at 2747.339 kb on + strand, within CA264_11800 at 2747.339 kb on + strand, within CA264_11800 at 2747.339 kb on + strand, within CA264_11800 at 2747.340 kb on - strand, within CA264_11800 at 2747.340 kb on - strand, within CA264_11800 at 2747.340 kb on - strand, within CA264_11800 at 2747.340 kb on - strand, within CA264_11800 at 2747.342 kb on - strand, within CA264_11800 at 2747.342 kb on - strand, within CA264_11800 at 2747.358 kb on + strand, within CA264_11800 at 2747.365 kb on - strand, within CA264_11800 at 2747.424 kb on + strand, within CA264_11800 at 2747.424 kb on + strand, within CA264_11800 at 2747.424 kb on + strand, within CA264_11800 at 2747.453 kb on + strand, within CA264_11800 at 2747.464 kb on - strand, within CA264_11800 at 2747.617 kb on - strand, within CA264_11800 at 2747.618 kb on + strand, within CA264_11800 at 2747.619 kb on - strand, within CA264_11800 at 2747.622 kb on + strand, within CA264_11800 at 2747.622 kb on + strand, within CA264_11800 at 2747.622 kb on + strand, within CA264_11800 at 2747.623 kb on - strand, within CA264_11800 at 2747.623 kb on - strand, within CA264_11800 at 2747.623 kb on - strand, within CA264_11800 at 2747.948 kb on - strand, within CA264_11800 at 2748.044 kb on - strand, within CA264_11800 at 2748.044 kb on - strand, within CA264_11800 at 2748.114 kb on + strand at 2748.114 kb on + strand at 2748.114 kb on + strand at 2748.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 2,745,273 - +0.5 2,745,273 - +1.7 2,745,277 + +1.0 2,745,277 + -0.6 2,745,282 + -0.1 2,745,282 + -0.3 2,745,303 + +0.5 2,745,303 + -0.4 2,745,303 + +0.1 2,745,309 + -0.4 2,745,309 + -0.5 2,745,309 + -0.4 2,745,315 + -0.4 2,745,315 + -0.4 2,745,812 + -0.2 2,745,812 + -1.0 2,745,813 - +1.2 2,746,031 - +0.3 2,746,037 - +0.3 2,746,100 + +0.0 2,746,101 - -0.3 2,746,169 - -0.8 2,746,169 - +0.4 2,746,190 + +0.2 2,746,190 + +0.4 2,746,190 + -0.8 2,746,191 - -0.2 2,746,211 + +1.3 2,746,211 + -0.0 2,746,231 + +0.0 2,746,240 + -0.4 2,746,240 + -0.1 2,746,241 - -0.4 2,746,241 - -0.6 2,746,325 - +1.4 2,746,360 - CA264_11795 0.11 +0.9 2,746,360 - CA264_11795 0.11 +0.4 2,746,409 - CA264_11795 0.16 +1.9 2,746,409 - CA264_11795 0.16 -0.2 2,746,409 - CA264_11795 0.16 +1.1 2,746,414 - CA264_11795 0.17 -0.3 2,746,414 - CA264_11795 0.17 +0.5 2,746,470 - CA264_11795 0.22 -0.2 2,746,894 + CA264_11795 0.66 +0.7 2,746,896 + CA264_11795 0.66 +0.6 2,747,003 + CA264_11795 0.77 +1.1 2,747,003 + CA264_11795 0.77 +0.8 2,747,003 + CA264_11795 0.77 +2.0 2,747,004 - CA264_11795 0.77 +1.4 2,747,004 - CA264_11795 0.77 +0.4 2,747,004 - CA264_11795 0.77 +0.6 2,747,035 + CA264_11795 0.81 +1.8 2,747,092 - CA264_11795 0.86 +0.8 2,747,092 - CA264_11795 0.86 +0.9 2,747,092 - CA264_11795 0.86 +0.2 2,747,126 + +0.9 2,747,147 - +0.4 2,747,153 - +1.6 2,747,252 + +0.5 2,747,338 - CA264_11800 0.12 +0.3 2,747,339 + CA264_11800 0.12 +2.0 2,747,339 + CA264_11800 0.12 +0.7 2,747,339 + CA264_11800 0.12 +0.6 2,747,340 - CA264_11800 0.13 +1.0 2,747,340 - CA264_11800 0.13 +1.7 2,747,340 - CA264_11800 0.13 +1.6 2,747,340 - CA264_11800 0.13 +0.7 2,747,342 - CA264_11800 0.13 +0.8 2,747,342 - CA264_11800 0.13 +1.6 2,747,358 + CA264_11800 0.14 -0.4 2,747,365 - CA264_11800 0.15 +0.3 2,747,424 + CA264_11800 0.21 +0.8 2,747,424 + CA264_11800 0.21 +1.1 2,747,424 + CA264_11800 0.21 +0.6 2,747,453 + CA264_11800 0.24 +0.6 2,747,464 - CA264_11800 0.25 +0.7 2,747,617 - CA264_11800 0.41 +0.3 2,747,618 + CA264_11800 0.42 -0.1 2,747,619 - CA264_11800 0.42 +0.6 2,747,622 + CA264_11800 0.42 +0.8 2,747,622 + CA264_11800 0.42 +0.7 2,747,622 + CA264_11800 0.42 +0.9 2,747,623 - CA264_11800 0.42 +0.5 2,747,623 - CA264_11800 0.42 -0.6 2,747,623 - CA264_11800 0.42 +0.6 2,747,948 - CA264_11800 0.76 +1.0 2,748,044 - CA264_11800 0.86 +1.0 2,748,044 - CA264_11800 0.86 -0.0 2,748,114 + +0.5 2,748,114 + +0.6 2,748,114 + +0.5 2,748,174 + +0.1
Or see this region's nucleotide sequence