Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11795

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11780 and CA264_11785 are separated by 68 nucleotidesCA264_11785 and CA264_11790 are separated by 121 nucleotidesCA264_11790 and CA264_11795 are separated by 348 nucleotidesCA264_11795 and CA264_11800 overlap by 4 nucleotides CA264_11780: CA264_11780 - tRNA-Arg, at 2,745,477 to 2,745,550 _11780 CA264_11785: CA264_11785 - tRNA-Pro, at 2,745,619 to 2,745,695 _11785 CA264_11790: CA264_11790 - tRNA-Ser, at 2,745,817 to 2,745,903 _11790 CA264_11795: CA264_11795 - aerotolerance regulator BatB, at 2,746,252 to 2,747,223 _11795 CA264_11800: CA264_11800 - aerotolerance protein, at 2,747,220 to 2,748,176 _11800 Position (kb) 2746 2747 2748Strain fitness (log2 ratio) -1 0 1 2at 2745.273 kb on - strandat 2745.273 kb on - strandat 2745.277 kb on + strandat 2745.277 kb on + strandat 2745.282 kb on + strandat 2745.282 kb on + strandat 2745.303 kb on + strandat 2745.303 kb on + strandat 2745.303 kb on + strandat 2745.309 kb on + strandat 2745.309 kb on + strandat 2745.309 kb on + strandat 2745.315 kb on + strandat 2745.315 kb on + strandat 2745.812 kb on + strandat 2745.812 kb on + strandat 2745.813 kb on - strandat 2746.031 kb on - strandat 2746.037 kb on - strandat 2746.100 kb on + strandat 2746.101 kb on - strandat 2746.169 kb on - strandat 2746.169 kb on - strandat 2746.190 kb on + strandat 2746.190 kb on + strandat 2746.190 kb on + strandat 2746.191 kb on - strandat 2746.211 kb on + strandat 2746.211 kb on + strandat 2746.231 kb on + strandat 2746.240 kb on + strandat 2746.240 kb on + strandat 2746.241 kb on - strandat 2746.241 kb on - strandat 2746.325 kb on - strandat 2746.360 kb on - strand, within CA264_11795at 2746.360 kb on - strand, within CA264_11795at 2746.409 kb on - strand, within CA264_11795at 2746.409 kb on - strand, within CA264_11795at 2746.409 kb on - strand, within CA264_11795at 2746.414 kb on - strand, within CA264_11795at 2746.414 kb on - strand, within CA264_11795at 2746.470 kb on - strand, within CA264_11795at 2746.894 kb on + strand, within CA264_11795at 2746.896 kb on + strand, within CA264_11795at 2747.003 kb on + strand, within CA264_11795at 2747.003 kb on + strand, within CA264_11795at 2747.003 kb on + strand, within CA264_11795at 2747.004 kb on - strand, within CA264_11795at 2747.004 kb on - strand, within CA264_11795at 2747.004 kb on - strand, within CA264_11795at 2747.035 kb on + strand, within CA264_11795at 2747.092 kb on - strand, within CA264_11795at 2747.092 kb on - strand, within CA264_11795at 2747.092 kb on - strand, within CA264_11795at 2747.126 kb on + strandat 2747.147 kb on - strandat 2747.153 kb on - strandat 2747.252 kb on + strandat 2747.338 kb on - strand, within CA264_11800at 2747.339 kb on + strand, within CA264_11800at 2747.339 kb on + strand, within CA264_11800at 2747.339 kb on + strand, within CA264_11800at 2747.340 kb on - strand, within CA264_11800at 2747.340 kb on - strand, within CA264_11800at 2747.340 kb on - strand, within CA264_11800at 2747.340 kb on - strand, within CA264_11800at 2747.342 kb on - strand, within CA264_11800at 2747.342 kb on - strand, within CA264_11800at 2747.358 kb on + strand, within CA264_11800at 2747.365 kb on - strand, within CA264_11800at 2747.424 kb on + strand, within CA264_11800at 2747.424 kb on + strand, within CA264_11800at 2747.424 kb on + strand, within CA264_11800at 2747.453 kb on + strand, within CA264_11800at 2747.464 kb on - strand, within CA264_11800at 2747.617 kb on - strand, within CA264_11800at 2747.618 kb on + strand, within CA264_11800at 2747.619 kb on - strand, within CA264_11800at 2747.622 kb on + strand, within CA264_11800at 2747.622 kb on + strand, within CA264_11800at 2747.622 kb on + strand, within CA264_11800at 2747.623 kb on - strand, within CA264_11800at 2747.623 kb on - strand, within CA264_11800at 2747.623 kb on - strand, within CA264_11800at 2747.948 kb on - strand, within CA264_11800at 2748.044 kb on - strand, within CA264_11800at 2748.044 kb on - strand, within CA264_11800at 2748.114 kb on + strandat 2748.114 kb on + strandat 2748.114 kb on + strandat 2748.174 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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2,745,273 - +0.5
2,745,273 - +1.7
2,745,277 + +1.0
2,745,277 + -0.6
2,745,282 + -0.1
2,745,282 + -0.3
2,745,303 + +0.5
2,745,303 + -0.4
2,745,303 + +0.1
2,745,309 + -0.4
2,745,309 + -0.5
2,745,309 + -0.4
2,745,315 + -0.4
2,745,315 + -0.4
2,745,812 + -0.2
2,745,812 + -1.0
2,745,813 - +1.2
2,746,031 - +0.3
2,746,037 - +0.3
2,746,100 + +0.0
2,746,101 - -0.3
2,746,169 - -0.8
2,746,169 - +0.4
2,746,190 + +0.2
2,746,190 + +0.4
2,746,190 + -0.8
2,746,191 - -0.2
2,746,211 + +1.3
2,746,211 + -0.0
2,746,231 + +0.0
2,746,240 + -0.4
2,746,240 + -0.1
2,746,241 - -0.4
2,746,241 - -0.6
2,746,325 - +1.4
2,746,360 - CA264_11795 0.11 +0.9
2,746,360 - CA264_11795 0.11 +0.4
2,746,409 - CA264_11795 0.16 +1.9
2,746,409 - CA264_11795 0.16 -0.2
2,746,409 - CA264_11795 0.16 +1.1
2,746,414 - CA264_11795 0.17 -0.3
2,746,414 - CA264_11795 0.17 +0.5
2,746,470 - CA264_11795 0.22 -0.2
2,746,894 + CA264_11795 0.66 +0.7
2,746,896 + CA264_11795 0.66 +0.6
2,747,003 + CA264_11795 0.77 +1.1
2,747,003 + CA264_11795 0.77 +0.8
2,747,003 + CA264_11795 0.77 +2.0
2,747,004 - CA264_11795 0.77 +1.4
2,747,004 - CA264_11795 0.77 +0.4
2,747,004 - CA264_11795 0.77 +0.6
2,747,035 + CA264_11795 0.81 +1.8
2,747,092 - CA264_11795 0.86 +0.8
2,747,092 - CA264_11795 0.86 +0.9
2,747,092 - CA264_11795 0.86 +0.2
2,747,126 + +0.9
2,747,147 - +0.4
2,747,153 - +1.6
2,747,252 + +0.5
2,747,338 - CA264_11800 0.12 +0.3
2,747,339 + CA264_11800 0.12 +2.0
2,747,339 + CA264_11800 0.12 +0.7
2,747,339 + CA264_11800 0.12 +0.6
2,747,340 - CA264_11800 0.13 +1.0
2,747,340 - CA264_11800 0.13 +1.7
2,747,340 - CA264_11800 0.13 +1.6
2,747,340 - CA264_11800 0.13 +0.7
2,747,342 - CA264_11800 0.13 +0.8
2,747,342 - CA264_11800 0.13 +1.6
2,747,358 + CA264_11800 0.14 -0.4
2,747,365 - CA264_11800 0.15 +0.3
2,747,424 + CA264_11800 0.21 +0.8
2,747,424 + CA264_11800 0.21 +1.1
2,747,424 + CA264_11800 0.21 +0.6
2,747,453 + CA264_11800 0.24 +0.6
2,747,464 - CA264_11800 0.25 +0.7
2,747,617 - CA264_11800 0.41 +0.3
2,747,618 + CA264_11800 0.42 -0.1
2,747,619 - CA264_11800 0.42 +0.6
2,747,622 + CA264_11800 0.42 +0.8
2,747,622 + CA264_11800 0.42 +0.7
2,747,622 + CA264_11800 0.42 +0.9
2,747,623 - CA264_11800 0.42 +0.5
2,747,623 - CA264_11800 0.42 -0.6
2,747,623 - CA264_11800 0.42 +0.6
2,747,948 - CA264_11800 0.76 +1.0
2,748,044 - CA264_11800 0.86 +1.0
2,748,044 - CA264_11800 0.86 -0.0
2,748,114 + +0.5
2,748,114 + +0.6
2,748,114 + +0.5
2,748,174 + +0.1

Or see this region's nucleotide sequence