Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07750

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_07740 and CA264_07745 are separated by 185 nucleotidesCA264_07745 and CA264_07750 are separated by 350 nucleotidesCA264_07750 and CA264_07755 are separated by 3 nucleotidesCA264_07755 and CA264_07760 are separated by 105 nucleotides CA264_07740: CA264_07740 - TIGR02757 family protein, at 1,794,260 to 1,795,036 _07740 CA264_07745: CA264_07745 - hypothetical protein, at 1,795,222 to 1,795,473 _07745 CA264_07750: CA264_07750 - elongation factor P, at 1,795,824 to 1,796,387 _07750 CA264_07755: CA264_07755 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 1,796,391 to 1,796,882 _07755 CA264_07760: CA264_07760 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,796,988 to 1,798,334 _07760 Position (kb) 1795 1796 1797Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1794.884 kb on + strand, within CA264_07740at 1794.885 kb on - strand, within CA264_07740at 1794.885 kb on - strand, within CA264_07740at 1794.964 kb on + strandat 1794.965 kb on - strandat 1795.034 kb on + strandat 1795.034 kb on + strandat 1795.034 kb on + strandat 1795.034 kb on + strandat 1795.035 kb on - strandat 1795.035 kb on - strandat 1795.048 kb on + strandat 1795.049 kb on - strandat 1795.051 kb on - strandat 1795.108 kb on + strandat 1795.121 kb on + strandat 1795.121 kb on + strandat 1795.121 kb on + strandat 1795.128 kb on - strandat 1795.128 kb on - strandat 1795.128 kb on - strandat 1795.130 kb on + strandat 1795.130 kb on + strandat 1795.130 kb on + strandat 1795.158 kb on + strandat 1795.158 kb on + strandat 1795.158 kb on + strandat 1795.159 kb on - strandat 1795.172 kb on + strandat 1795.184 kb on - strandat 1795.202 kb on - strandat 1795.249 kb on - strand, within CA264_07745at 1795.264 kb on + strand, within CA264_07745at 1795.268 kb on + strand, within CA264_07745at 1795.269 kb on - strand, within CA264_07745at 1795.280 kb on + strand, within CA264_07745at 1795.292 kb on + strand, within CA264_07745at 1795.361 kb on + strand, within CA264_07745at 1795.394 kb on + strand, within CA264_07745at 1795.394 kb on + strand, within CA264_07745at 1795.468 kb on + strandat 1795.489 kb on + strandat 1795.495 kb on + strandat 1795.496 kb on - strandat 1795.530 kb on + strandat 1795.531 kb on - strandat 1795.560 kb on - strandat 1795.584 kb on + strandat 1795.687 kb on + strandat 1795.687 kb on + strandat 1795.689 kb on + strandat 1795.690 kb on + strandat 1795.690 kb on - strandat 1795.746 kb on + strandat 1795.750 kb on + strandat 1795.750 kb on + strandat 1795.783 kb on + strandat 1795.784 kb on - strandat 1795.784 kb on - strandat 1795.789 kb on + strandat 1795.790 kb on - strandat 1795.813 kb on - strandat 1795.823 kb on + strandat 1795.823 kb on + strandat 1795.858 kb on + strandat 1796.057 kb on - strand, within CA264_07750at 1796.062 kb on - strand, within CA264_07750at 1796.226 kb on - strand, within CA264_07750at 1796.226 kb on - strand, within CA264_07750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
remove
1,794,884 + CA264_07740 0.80 -1.7
1,794,885 - CA264_07740 0.80 -2.6
1,794,885 - CA264_07740 0.80 -2.6
1,794,964 + -1.2
1,794,965 - -1.8
1,795,034 + -1.2
1,795,034 + -0.5
1,795,034 + -0.9
1,795,034 + -1.8
1,795,035 - -3.2
1,795,035 - -0.7
1,795,048 + -0.8
1,795,049 - -0.9
1,795,051 - -2.1
1,795,108 + -0.7
1,795,121 + -0.6
1,795,121 + -2.2
1,795,121 + -0.9
1,795,128 - -1.9
1,795,128 - -1.8
1,795,128 - -2.9
1,795,130 + -0.6
1,795,130 + -0.0
1,795,130 + -0.8
1,795,158 + +0.5
1,795,158 + -0.8
1,795,158 + +0.2
1,795,159 - -0.6
1,795,172 + -1.3
1,795,184 - -1.6
1,795,202 - -1.1
1,795,249 - CA264_07745 0.11 -1.4
1,795,264 + CA264_07745 0.17 -1.2
1,795,268 + CA264_07745 0.18 -1.2
1,795,269 - CA264_07745 0.19 -1.6
1,795,280 + CA264_07745 0.23 -0.7
1,795,292 + CA264_07745 0.28 -0.7
1,795,361 + CA264_07745 0.55 -0.1
1,795,394 + CA264_07745 0.68 -1.5
1,795,394 + CA264_07745 0.68 +0.8
1,795,468 + -0.0
1,795,489 + -0.2
1,795,495 + +0.3
1,795,496 - -1.7
1,795,530 + -0.3
1,795,531 - -1.3
1,795,560 - -1.5
1,795,584 + -0.1
1,795,687 + +0.6
1,795,687 + +0.3
1,795,689 + +0.9
1,795,690 + -0.0
1,795,690 - +0.1
1,795,746 + +1.8
1,795,750 + -0.1
1,795,750 + -0.1
1,795,783 + -0.3
1,795,784 - -1.3
1,795,784 - -0.7
1,795,789 + -0.3
1,795,790 - -1.1
1,795,813 - -2.7
1,795,823 + -0.1
1,795,823 + +0.6
1,795,858 + +0.7
1,796,057 - CA264_07750 0.41 -0.7
1,796,062 - CA264_07750 0.42 -1.3
1,796,226 - CA264_07750 0.71 -0.9
1,796,226 - CA264_07750 0.71 -2.3

Or see this region's nucleotide sequence