Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_05070 and CA264_05075 are separated by 20 nucleotides CA264_05075 and CA264_05080 are separated by 239 nucleotides CA264_05080 and CA264_05085 overlap by 11 nucleotides CA264_05085 and CA264_05090 are separated by 1 nucleotides
CA264_05070: CA264_05070 - indole-3-glycerol phosphate synthase, at 1,174,297 to 1,175,115
_05070
CA264_05075: CA264_05075 - hypothetical protein, at 1,175,136 to 1,175,759
_05075
CA264_05080: CA264_05080 - tryptophan synthase subunit beta, at 1,175,999 to 1,177,189
_05080
CA264_05085: CA264_05085 - tryptophan synthase subunit alpha, at 1,177,179 to 1,177,955
_05085
CA264_05090: CA264_05090 - 3-deoxy-7-phosphoheptulonate synthase, at 1,177,957 to 1,178,967
_05090
Position (kb)
1175
1176
1177
1178 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1175.026 kb on - strand, within CA264_05070 at 1175.129 kb on + strand at 1175.205 kb on + strand, within CA264_05075 at 1175.206 kb on - strand, within CA264_05075 at 1175.216 kb on + strand, within CA264_05075 at 1175.223 kb on + strand, within CA264_05075 at 1175.224 kb on - strand, within CA264_05075 at 1175.255 kb on + strand, within CA264_05075 at 1175.256 kb on - strand, within CA264_05075 at 1175.355 kb on + strand, within CA264_05075 at 1175.438 kb on + strand, within CA264_05075 at 1175.453 kb on - strand, within CA264_05075 at 1175.459 kb on + strand, within CA264_05075 at 1175.459 kb on + strand, within CA264_05075 at 1175.460 kb on - strand, within CA264_05075 at 1175.460 kb on - strand, within CA264_05075 at 1175.535 kb on + strand, within CA264_05075 at 1175.536 kb on - strand, within CA264_05075 at 1175.536 kb on - strand at 1175.536 kb on - strand, within CA264_05075 at 1175.569 kb on + strand, within CA264_05075 at 1175.569 kb on + strand, within CA264_05075 at 1175.598 kb on + strand, within CA264_05075 at 1175.598 kb on + strand, within CA264_05075 at 1175.599 kb on - strand, within CA264_05075 at 1175.716 kb on + strand at 1175.716 kb on + strand at 1175.717 kb on - strand at 1175.717 kb on - strand at 1175.798 kb on - strand at 1175.836 kb on + strand at 1175.837 kb on - strand at 1175.840 kb on + strand at 1175.840 kb on + strand at 1175.890 kb on + strand at 1175.891 kb on - strand at 1175.934 kb on + strand at 1175.951 kb on - strand at 1175.955 kb on + strand at 1175.968 kb on + strand at 1176.005 kb on + strand at 1176.006 kb on - strand at 1176.078 kb on + strand at 1176.098 kb on + strand at 1176.110 kb on - strand at 1176.158 kb on + strand, within CA264_05080 at 1176.182 kb on + strand, within CA264_05080 at 1176.183 kb on - strand, within CA264_05080 at 1176.183 kb on - strand, within CA264_05080 at 1176.210 kb on - strand, within CA264_05080 at 1176.210 kb on - strand, within CA264_05080 at 1176.210 kb on - strand, within CA264_05080 at 1176.401 kb on + strand, within CA264_05080 at 1176.401 kb on + strand, within CA264_05080 at 1176.401 kb on + strand, within CA264_05080 at 1176.414 kb on + strand, within CA264_05080 at 1176.515 kb on - strand, within CA264_05080 at 1176.675 kb on + strand, within CA264_05080 at 1176.691 kb on - strand, within CA264_05080 at 1176.765 kb on + strand, within CA264_05080 at 1176.814 kb on + strand, within CA264_05080 at 1176.821 kb on - strand, within CA264_05080 at 1176.821 kb on - strand, within CA264_05080 at 1176.821 kb on - strand, within CA264_05080 at 1176.821 kb on - strand, within CA264_05080 at 1176.821 kb on - strand, within CA264_05080 at 1176.822 kb on + strand, within CA264_05080 at 1176.822 kb on + strand, within CA264_05080 at 1176.822 kb on + strand, within CA264_05080 at 1176.822 kb on + strand, within CA264_05080 at 1176.823 kb on - strand, within CA264_05080 at 1176.823 kb on - strand, within CA264_05080 at 1176.888 kb on + strand, within CA264_05080 at 1176.899 kb on + strand, within CA264_05080 at 1176.900 kb on - strand, within CA264_05080 at 1176.904 kb on + strand, within CA264_05080 at 1176.905 kb on - strand, within CA264_05080 at 1177.117 kb on + strand at 1177.149 kb on + strand at 1177.149 kb on + strand at 1177.150 kb on - strand at 1177.162 kb on - strand at 1177.187 kb on + strand at 1177.193 kb on + strand at 1177.194 kb on - strand at 1177.235 kb on - strand at 1177.326 kb on - strand, within CA264_05085 at 1177.326 kb on - strand, within CA264_05085 at 1177.405 kb on + strand, within CA264_05085 at 1177.405 kb on + strand, within CA264_05085 at 1177.406 kb on - strand, within CA264_05085 at 1177.406 kb on - strand, within CA264_05085 at 1177.410 kb on - strand, within CA264_05085 at 1177.494 kb on + strand, within CA264_05085 at 1177.532 kb on - strand, within CA264_05085 at 1177.536 kb on - strand, within CA264_05085 at 1177.538 kb on - strand, within CA264_05085 at 1177.538 kb on - strand, within CA264_05085 at 1177.547 kb on + strand, within CA264_05085 at 1177.547 kb on + strand, within CA264_05085 at 1177.547 kb on + strand, within CA264_05085 at 1177.548 kb on - strand, within CA264_05085 at 1177.576 kb on - strand, within CA264_05085 at 1177.587 kb on + strand, within CA264_05085 at 1177.587 kb on + strand, within CA264_05085 at 1177.588 kb on - strand, within CA264_05085 at 1177.589 kb on + strand, within CA264_05085 at 1177.610 kb on + strand, within CA264_05085 at 1177.611 kb on - strand, within CA264_05085 at 1177.670 kb on - strand, within CA264_05085 at 1177.680 kb on - strand, within CA264_05085 at 1177.716 kb on - strand, within CA264_05085 at 1177.738 kb on + strand, within CA264_05085 at 1177.758 kb on + strand, within CA264_05085 at 1177.758 kb on + strand, within CA264_05085 at 1177.759 kb on - strand, within CA264_05085 at 1177.778 kb on + strand, within CA264_05085 at 1177.779 kb on - strand, within CA264_05085 at 1177.935 kb on - strand at 1177.935 kb on - strand at 1177.965 kb on - strand at 1177.965 kb on - strand at 1178.019 kb on - strand at 1178.049 kb on + strand at 1178.158 kb on + strand, within CA264_05090 at 1178.159 kb on - strand, within CA264_05090 at 1178.159 kb on - strand, within CA264_05090 at 1178.160 kb on + strand, within CA264_05090 at 1178.176 kb on - strand, within CA264_05090
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 1,175,026 - CA264_05070 0.89 -0.9 1,175,129 + -0.1 1,175,205 + CA264_05075 0.11 -1.8 1,175,206 - CA264_05075 0.11 -0.0 1,175,216 + CA264_05075 0.13 -0.1 1,175,223 + CA264_05075 0.14 -0.0 1,175,224 - CA264_05075 0.14 -2.2 1,175,255 + CA264_05075 0.19 +0.4 1,175,256 - CA264_05075 0.19 -0.5 1,175,355 + CA264_05075 0.35 -0.1 1,175,438 + CA264_05075 0.48 -0.4 1,175,453 - CA264_05075 0.51 -0.7 1,175,459 + CA264_05075 0.52 +0.4 1,175,459 + CA264_05075 0.52 +0.1 1,175,460 - CA264_05075 0.52 +1.0 1,175,460 - CA264_05075 0.52 -0.3 1,175,535 + CA264_05075 0.64 -0.7 1,175,536 - CA264_05075 0.64 +0.9 1,175,536 - +2.4 1,175,536 - CA264_05075 0.64 -1.3 1,175,569 + CA264_05075 0.69 +0.2 1,175,569 + CA264_05075 0.69 -0.5 1,175,598 + CA264_05075 0.74 -0.4 1,175,598 + CA264_05075 0.74 +0.9 1,175,599 - CA264_05075 0.74 -0.3 1,175,716 + -0.5 1,175,716 + -0.3 1,175,717 - -0.3 1,175,717 - -0.9 1,175,798 - -0.2 1,175,836 + +0.9 1,175,837 - -1.9 1,175,840 + +1.0 1,175,840 + -0.4 1,175,890 + -1.5 1,175,891 - -1.0 1,175,934 + -0.8 1,175,951 - -0.5 1,175,955 + -0.0 1,175,968 + -0.8 1,176,005 + -0.2 1,176,006 - +0.2 1,176,078 + -0.2 1,176,098 + -0.1 1,176,110 - +0.6 1,176,158 + CA264_05080 0.13 +0.1 1,176,182 + CA264_05080 0.15 -0.2 1,176,183 - CA264_05080 0.15 -0.1 1,176,183 - CA264_05080 0.15 -0.8 1,176,210 - CA264_05080 0.18 +0.3 1,176,210 - CA264_05080 0.18 -0.0 1,176,210 - CA264_05080 0.18 +2.4 1,176,401 + CA264_05080 0.34 +0.4 1,176,401 + CA264_05080 0.34 -1.0 1,176,401 + CA264_05080 0.34 +0.3 1,176,414 + CA264_05080 0.35 -0.1 1,176,515 - CA264_05080 0.43 +0.1 1,176,675 + CA264_05080 0.57 +0.5 1,176,691 - CA264_05080 0.58 +0.0 1,176,765 + CA264_05080 0.64 +2.1 1,176,814 + CA264_05080 0.68 +0.3 1,176,821 - CA264_05080 0.69 -1.9 1,176,821 - CA264_05080 0.69 +0.5 1,176,821 - CA264_05080 0.69 +0.2 1,176,821 - CA264_05080 0.69 -0.6 1,176,821 - CA264_05080 0.69 -0.0 1,176,822 + CA264_05080 0.69 +0.6 1,176,822 + CA264_05080 0.69 +1.9 1,176,822 + CA264_05080 0.69 -0.3 1,176,822 + CA264_05080 0.69 -0.0 1,176,823 - CA264_05080 0.69 -0.8 1,176,823 - CA264_05080 0.69 +0.2 1,176,888 + CA264_05080 0.75 +0.4 1,176,899 + CA264_05080 0.76 -1.6 1,176,900 - CA264_05080 0.76 +0.7 1,176,904 + CA264_05080 0.76 +0.1 1,176,905 - CA264_05080 0.76 +0.6 1,177,117 + -0.1 1,177,149 + +0.3 1,177,149 + +0.3 1,177,150 - +0.6 1,177,162 - +0.1 1,177,187 + +0.2 1,177,193 + -0.9 1,177,194 - +1.7 1,177,235 - -1.3 1,177,326 - CA264_05085 0.19 +0.6 1,177,326 - CA264_05085 0.19 +1.2 1,177,405 + CA264_05085 0.29 +1.3 1,177,405 + CA264_05085 0.29 -0.4 1,177,406 - CA264_05085 0.29 +0.5 1,177,406 - CA264_05085 0.29 +0.2 1,177,410 - CA264_05085 0.30 +0.2 1,177,494 + CA264_05085 0.41 -0.5 1,177,532 - CA264_05085 0.45 -0.2 1,177,536 - CA264_05085 0.46 -0.3 1,177,538 - CA264_05085 0.46 -0.1 1,177,538 - CA264_05085 0.46 -0.4 1,177,547 + CA264_05085 0.47 +0.1 1,177,547 + CA264_05085 0.47 -0.5 1,177,547 + CA264_05085 0.47 -0.7 1,177,548 - CA264_05085 0.47 +0.2 1,177,576 - CA264_05085 0.51 +0.5 1,177,587 + CA264_05085 0.53 +2.3 1,177,587 + CA264_05085 0.53 +0.2 1,177,588 - CA264_05085 0.53 +0.2 1,177,589 + CA264_05085 0.53 +0.7 1,177,610 + CA264_05085 0.55 +0.6 1,177,611 - CA264_05085 0.56 +1.4 1,177,670 - CA264_05085 0.63 -0.5 1,177,680 - CA264_05085 0.64 +1.9 1,177,716 - CA264_05085 0.69 +1.0 1,177,738 + CA264_05085 0.72 +0.2 1,177,758 + CA264_05085 0.75 +0.5 1,177,758 + CA264_05085 0.75 +0.1 1,177,759 - CA264_05085 0.75 +0.4 1,177,778 + CA264_05085 0.77 +0.6 1,177,779 - CA264_05085 0.77 +0.5 1,177,935 - -0.2 1,177,935 - +0.7 1,177,965 - -0.9 1,177,965 - -0.3 1,178,019 - -0.2 1,178,049 + -0.1 1,178,158 + CA264_05090 0.20 -0.4 1,178,159 - CA264_05090 0.20 -0.3 1,178,159 - CA264_05090 0.20 -0.3 1,178,160 + CA264_05090 0.20 -0.3 1,178,176 - CA264_05090 0.22 -0.7
Or see this region's nucleotide sequence