Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03880 and CA264_03885 are separated by 25 nucleotides CA264_03885 and CA264_03890 overlap by 4 nucleotides
CA264_03880: CA264_03880 - crossover junction endodeoxyribonuclease RuvC, at 904,164 to 904,736
_03880
CA264_03885: CA264_03885 - hypothetical protein, at 904,762 to 905,751
_03885
CA264_03890: CA264_03890 - family 2 glycosyl transferase, at 905,748 to 906,881
_03890
Position (kb) 904
905
906 Strain fitness (log2 ratio) -1
0
1 at 903.827 kb on + strand at 903.895 kb on + strand at 903.925 kb on + strand at 903.975 kb on - strand at 903.989 kb on - strand at 904.034 kb on + strand at 904.034 kb on + strand at 904.035 kb on - strand at 904.076 kb on + strand at 904.077 kb on - strand at 904.077 kb on - strand at 904.081 kb on - strand at 904.131 kb on + strand at 904.146 kb on - strand at 904.150 kb on - strand at 904.150 kb on - strand at 904.475 kb on + strand, within CA264_03880 at 904.758 kb on + strand at 904.759 kb on - strand at 904.779 kb on + strand at 904.922 kb on - strand, within CA264_03885 at 905.209 kb on + strand, within CA264_03885 at 905.210 kb on - strand, within CA264_03885 at 905.214 kb on + strand, within CA264_03885 at 905.215 kb on - strand, within CA264_03885 at 905.220 kb on + strand, within CA264_03885 at 905.308 kb on + strand, within CA264_03885 at 905.392 kb on + strand, within CA264_03885 at 905.485 kb on - strand, within CA264_03885 at 905.694 kb on - strand at 905.696 kb on + strand at 905.797 kb on + strand at 905.862 kb on - strand, within CA264_03890 at 905.879 kb on - strand, within CA264_03890 at 905.975 kb on - strand, within CA264_03890 at 906.066 kb on + strand, within CA264_03890 at 906.131 kb on - strand, within CA264_03890 at 906.131 kb on - strand, within CA264_03890 at 906.189 kb on + strand, within CA264_03890 at 906.189 kb on + strand, within CA264_03890 at 906.190 kb on - strand, within CA264_03890 at 906.246 kb on - strand, within CA264_03890 at 906.314 kb on + strand, within CA264_03890 at 906.374 kb on - strand, within CA264_03890 at 906.497 kb on + strand, within CA264_03890 at 906.647 kb on - strand, within CA264_03890 at 906.696 kb on + strand, within CA264_03890 at 906.697 kb on - strand, within CA264_03890 at 906.697 kb on - strand, within CA264_03890
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 903,827 + -0.0 903,895 + -1.6 903,925 + +0.5 903,975 - -0.0 903,989 - +0.4 904,034 + +1.0 904,034 + +0.1 904,035 - +0.6 904,076 + +0.3 904,077 - +0.4 904,077 - +0.9 904,081 - +1.1 904,131 + +0.2 904,146 - +0.4 904,150 - -0.0 904,150 - +1.6 904,475 + CA264_03880 0.54 -0.8 904,758 + -0.1 904,759 - +0.8 904,779 + +0.3 904,922 - CA264_03885 0.16 -1.0 905,209 + CA264_03885 0.45 +1.5 905,210 - CA264_03885 0.45 -0.3 905,214 + CA264_03885 0.46 +1.0 905,215 - CA264_03885 0.46 +1.0 905,220 + CA264_03885 0.46 -0.2 905,308 + CA264_03885 0.55 +1.2 905,392 + CA264_03885 0.64 -0.1 905,485 - CA264_03885 0.73 +0.2 905,694 - +0.6 905,696 + -0.2 905,797 + -0.4 905,862 - CA264_03890 0.10 +0.5 905,879 - CA264_03890 0.12 -0.0 905,975 - CA264_03890 0.20 -1.2 906,066 + CA264_03890 0.28 -0.3 906,131 - CA264_03890 0.34 -0.1 906,131 - CA264_03890 0.34 -0.2 906,189 + CA264_03890 0.39 -0.1 906,189 + CA264_03890 0.39 +0.6 906,190 - CA264_03890 0.39 -0.1 906,246 - CA264_03890 0.44 +1.1 906,314 + CA264_03890 0.50 -0.1 906,374 - CA264_03890 0.55 +1.5 906,497 + CA264_03890 0.66 -0.6 906,647 - CA264_03890 0.79 -1.5 906,696 + CA264_03890 0.84 -0.7 906,697 - CA264_03890 0.84 +0.8 906,697 - CA264_03890 0.84 +0.3
Or see this region's nucleotide sequence