Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03685

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03675 and CA264_03680 are separated by 108 nucleotidesCA264_03680 and CA264_03685 are separated by 108 nucleotidesCA264_03685 and CA264_03690 are separated by 8 nucleotides CA264_03675: CA264_03675 - hypothetical protein, at 858,433 to 859,383 _03675 CA264_03680: CA264_03680 - hypothetical protein, at 859,492 to 859,809 _03680 CA264_03685: CA264_03685 - CusA/CzcA family heavy metal efflux RND transporter, at 859,918 to 864,294 _03685 CA264_03690: CA264_03690 - efflux transporter periplasmic adaptor subunit, at 864,303 to 865,547 _03690 Position (kb) 859 860 861 862 863 864 865Strain fitness (log2 ratio) -2 -1 0 1 2at 859.132 kb on + strand, within CA264_03675at 859.255 kb on + strand, within CA264_03675at 859.255 kb on + strand, within CA264_03675at 859.272 kb on + strand, within CA264_03675at 859.293 kb on + strandat 859.294 kb on - strandat 859.294 kb on - strandat 859.382 kb on - strandat 859.456 kb on - strandat 859.462 kb on - strandat 859.467 kb on + strandat 859.468 kb on - strandat 859.584 kb on + strand, within CA264_03680at 859.662 kb on + strand, within CA264_03680at 859.663 kb on - strand, within CA264_03680at 859.663 kb on - strand, within CA264_03680at 859.743 kb on - strand, within CA264_03680at 859.743 kb on - strand, within CA264_03680at 859.751 kb on - strand, within CA264_03680at 859.751 kb on - strand, within CA264_03680at 859.826 kb on + strandat 859.900 kb on + strandat 859.901 kb on - strandat 859.926 kb on + strandat 859.927 kb on - strandat 859.965 kb on - strandat 860.003 kb on - strandat 860.109 kb on + strandat 860.110 kb on - strandat 860.110 kb on - strandat 860.143 kb on - strandat 860.219 kb on + strandat 860.227 kb on + strandat 860.227 kb on + strandat 860.228 kb on - strandat 860.338 kb on + strandat 860.339 kb on - strandat 860.352 kb on - strandat 860.459 kb on + strand, within CA264_03685at 860.524 kb on + strand, within CA264_03685at 860.525 kb on - strand, within CA264_03685at 860.592 kb on + strand, within CA264_03685at 860.614 kb on + strand, within CA264_03685at 860.703 kb on - strand, within CA264_03685at 860.818 kb on + strand, within CA264_03685at 860.955 kb on - strand, within CA264_03685at 860.955 kb on - strand, within CA264_03685at 861.176 kb on - strand, within CA264_03685at 861.292 kb on + strand, within CA264_03685at 861.300 kb on + strand, within CA264_03685at 861.300 kb on + strand, within CA264_03685at 861.301 kb on - strand, within CA264_03685at 861.302 kb on + strand, within CA264_03685at 861.302 kb on + strand, within CA264_03685at 861.303 kb on - strand, within CA264_03685at 861.381 kb on + strand, within CA264_03685at 861.397 kb on + strand, within CA264_03685at 861.398 kb on - strand, within CA264_03685at 861.398 kb on - strand, within CA264_03685at 861.552 kb on + strand, within CA264_03685at 861.741 kb on + strand, within CA264_03685at 861.774 kb on + strand, within CA264_03685at 861.775 kb on - strand, within CA264_03685at 861.775 kb on - strand, within CA264_03685at 861.806 kb on + strand, within CA264_03685at 861.807 kb on - strand, within CA264_03685at 861.980 kb on - strand, within CA264_03685at 862.032 kb on + strand, within CA264_03685at 862.032 kb on + strand, within CA264_03685at 862.033 kb on - strand, within CA264_03685at 862.043 kb on + strand, within CA264_03685at 862.044 kb on - strand, within CA264_03685at 862.044 kb on - strand, within CA264_03685at 862.044 kb on - strand, within CA264_03685at 862.076 kb on + strand, within CA264_03685at 862.094 kb on + strand, within CA264_03685at 862.095 kb on - strand, within CA264_03685at 862.095 kb on - strand, within CA264_03685at 862.263 kb on - strand, within CA264_03685at 862.282 kb on + strand, within CA264_03685at 862.282 kb on + strand, within CA264_03685at 862.283 kb on - strand, within CA264_03685at 862.283 kb on - strand, within CA264_03685at 862.283 kb on - strand, within CA264_03685at 862.283 kb on - strand, within CA264_03685at 862.283 kb on - strand, within CA264_03685at 862.402 kb on - strand, within CA264_03685at 862.486 kb on + strand, within CA264_03685at 862.486 kb on + strand, within CA264_03685at 862.492 kb on - strand, within CA264_03685at 862.591 kb on - strand, within CA264_03685at 862.602 kb on + strand, within CA264_03685at 862.648 kb on - strand, within CA264_03685at 862.659 kb on - strand, within CA264_03685at 862.693 kb on - strand, within CA264_03685at 862.768 kb on - strand, within CA264_03685at 862.791 kb on + strand, within CA264_03685at 862.815 kb on - strand, within CA264_03685at 862.994 kb on + strand, within CA264_03685at 862.994 kb on + strand, within CA264_03685at 862.996 kb on + strand, within CA264_03685at 862.999 kb on + strand, within CA264_03685at 862.999 kb on + strand, within CA264_03685at 862.999 kb on + strand, within CA264_03685at 863.000 kb on - strand, within CA264_03685at 863.000 kb on - strand, within CA264_03685at 863.000 kb on - strand, within CA264_03685at 863.000 kb on - strand, within CA264_03685at 863.002 kb on + strand, within CA264_03685at 863.251 kb on + strand, within CA264_03685at 863.338 kb on + strand, within CA264_03685at 863.382 kb on + strand, within CA264_03685at 863.385 kb on - strand, within CA264_03685at 863.385 kb on - strand, within CA264_03685at 863.389 kb on + strand, within CA264_03685at 863.389 kb on + strand, within CA264_03685at 863.390 kb on - strand, within CA264_03685at 863.427 kb on - strand, within CA264_03685at 863.437 kb on + strand, within CA264_03685at 863.437 kb on + strand, within CA264_03685at 863.437 kb on + strand, within CA264_03685at 863.437 kb on + strand, within CA264_03685at 863.438 kb on - strand, within CA264_03685at 863.494 kb on - strand, within CA264_03685at 863.494 kb on - strand, within CA264_03685at 863.494 kb on - strand, within CA264_03685at 863.498 kb on - strand, within CA264_03685at 863.498 kb on - strand, within CA264_03685at 863.602 kb on + strand, within CA264_03685at 863.724 kb on + strand, within CA264_03685at 863.735 kb on + strand, within CA264_03685at 863.735 kb on + strand, within CA264_03685at 863.756 kb on + strand, within CA264_03685at 863.798 kb on - strand, within CA264_03685at 863.800 kb on - strand, within CA264_03685at 863.878 kb on + strandat 863.879 kb on - strandat 864.036 kb on - strandat 864.142 kb on + strandat 864.194 kb on - strandat 864.215 kb on - strandat 864.215 kb on - strandat 864.264 kb on + strandat 864.264 kb on + strandat 864.264 kb on + strandat 864.269 kb on - strandat 864.269 kb on - strandat 864.276 kb on - strandat 864.292 kb on + strandat 864.293 kb on - strandat 864.293 kb on - strandat 864.335 kb on + strandat 864.337 kb on + strandat 864.337 kb on + strandat 864.338 kb on - strandat 864.343 kb on + strandat 864.451 kb on + strand, within CA264_03690at 864.451 kb on + strand, within CA264_03690at 864.451 kb on + strand, within CA264_03690at 864.495 kb on + strand, within CA264_03690at 864.509 kb on + strand, within CA264_03690at 864.510 kb on - strand, within CA264_03690at 864.510 kb on - strand, within CA264_03690at 864.512 kb on + strand, within CA264_03690at 864.512 kb on + strand, within CA264_03690at 864.512 kb on + strand, within CA264_03690at 864.633 kb on + strand, within CA264_03690at 864.634 kb on - strand, within CA264_03690at 864.682 kb on + strand, within CA264_03690at 864.682 kb on + strand, within CA264_03690at 864.683 kb on - strand, within CA264_03690at 864.683 kb on - strand, within CA264_03690at 864.687 kb on + strand, within CA264_03690at 864.688 kb on - strand, within CA264_03690at 864.727 kb on - strand, within CA264_03690at 864.941 kb on + strand, within CA264_03690at 864.942 kb on - strand, within CA264_03690at 864.997 kb on - strand, within CA264_03690at 865.116 kb on + strand, within CA264_03690at 865.129 kb on + strand, within CA264_03690at 865.130 kb on - strand, within CA264_03690at 865.212 kb on - strand, within CA264_03690at 865.224 kb on + strand, within CA264_03690at 865.224 kb on + strand, within CA264_03690at 865.224 kb on + strand, within CA264_03690at 865.224 kb on + strand, within CA264_03690at 865.242 kb on + strand, within CA264_03690at 865.243 kb on - strand, within CA264_03690

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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859,132 + CA264_03675 0.74 -1.3
859,255 + CA264_03675 0.86 -0.1
859,255 + CA264_03675 0.86 +0.6
859,272 + CA264_03675 0.88 -0.1
859,293 + -0.9
859,294 - +0.8
859,294 - -1.3
859,382 - +0.3
859,456 - +1.9
859,462 - +0.1
859,467 + -0.1
859,468 - -0.3
859,584 + CA264_03680 0.29 +0.1
859,662 + CA264_03680 0.53 +1.7
859,663 - CA264_03680 0.54 -0.6
859,663 - CA264_03680 0.54 +0.8
859,743 - CA264_03680 0.79 -1.0
859,743 - CA264_03680 0.79 -0.9
859,751 - CA264_03680 0.81 -0.3
859,751 - CA264_03680 0.81 -0.1
859,826 + -0.1
859,900 + +0.1
859,901 - -0.4
859,926 + -0.7
859,927 - -0.3
859,965 - -0.5
860,003 - -0.7
860,109 + -0.1
860,110 - +0.3
860,110 - -0.4
860,143 - +0.6
860,219 + -0.9
860,227 + -0.2
860,227 + -0.5
860,228 - +0.3
860,338 + -0.6
860,339 - -0.1
860,352 - +0.6
860,459 + CA264_03685 0.12 -0.9
860,524 + CA264_03685 0.14 -2.0
860,525 - CA264_03685 0.14 +0.3
860,592 + CA264_03685 0.15 -0.7
860,614 + CA264_03685 0.16 -0.3
860,703 - CA264_03685 0.18 +0.0
860,818 + CA264_03685 0.21 +0.5
860,955 - CA264_03685 0.24 +0.1
860,955 - CA264_03685 0.24 +0.7
861,176 - CA264_03685 0.29 +1.8
861,292 + CA264_03685 0.31 +0.1
861,300 + CA264_03685 0.32 +0.7
861,300 + CA264_03685 0.32 -0.4
861,301 - CA264_03685 0.32 -0.5
861,302 + CA264_03685 0.32 -0.2
861,302 + CA264_03685 0.32 -0.9
861,303 - CA264_03685 0.32 -0.1
861,381 + CA264_03685 0.33 -1.3
861,397 + CA264_03685 0.34 -1.6
861,398 - CA264_03685 0.34 -0.6
861,398 - CA264_03685 0.34 +0.6
861,552 + CA264_03685 0.37 -0.9
861,741 + CA264_03685 0.42 -0.4
861,774 + CA264_03685 0.42 -1.0
861,775 - CA264_03685 0.42 +0.2
861,775 - CA264_03685 0.42 +0.6
861,806 + CA264_03685 0.43 +0.1
861,807 - CA264_03685 0.43 +0.4
861,980 - CA264_03685 0.47 -0.2
862,032 + CA264_03685 0.48 -0.5
862,032 + CA264_03685 0.48 +0.5
862,033 - CA264_03685 0.48 +0.2
862,043 + CA264_03685 0.49 -0.1
862,044 - CA264_03685 0.49 -0.3
862,044 - CA264_03685 0.49 -1.2
862,044 - CA264_03685 0.49 -0.7
862,076 + CA264_03685 0.49 +1.1
862,094 + CA264_03685 0.50 +0.8
862,095 - CA264_03685 0.50 +1.4
862,095 - CA264_03685 0.50 +0.3
862,263 - CA264_03685 0.54 -0.7
862,282 + CA264_03685 0.54 -0.1
862,282 + CA264_03685 0.54 -0.4
862,283 - CA264_03685 0.54 +0.3
862,283 - CA264_03685 0.54 -0.8
862,283 - CA264_03685 0.54 -0.6
862,283 - CA264_03685 0.54 -0.1
862,283 - CA264_03685 0.54 +2.5
862,402 - CA264_03685 0.57 +0.4
862,486 + CA264_03685 0.59 -0.7
862,486 + CA264_03685 0.59 +0.9
862,492 - CA264_03685 0.59 +0.2
862,591 - CA264_03685 0.61 -0.1
862,602 + CA264_03685 0.61 -0.7
862,648 - CA264_03685 0.62 -1.7
862,659 - CA264_03685 0.63 -0.1
862,693 - CA264_03685 0.63 -0.7
862,768 - CA264_03685 0.65 +0.7
862,791 + CA264_03685 0.66 -1.7
862,815 - CA264_03685 0.66 +0.3
862,994 + CA264_03685 0.70 -0.3
862,994 + CA264_03685 0.70 -0.7
862,996 + CA264_03685 0.70 -0.3
862,999 + CA264_03685 0.70 -0.6
862,999 + CA264_03685 0.70 -0.4
862,999 + CA264_03685 0.70 -0.1
863,000 - CA264_03685 0.70 +1.5
863,000 - CA264_03685 0.70 +0.8
863,000 - CA264_03685 0.70 -1.4
863,000 - CA264_03685 0.70 +1.7
863,002 + CA264_03685 0.70 -0.7
863,251 + CA264_03685 0.76 +0.3
863,338 + CA264_03685 0.78 -0.8
863,382 + CA264_03685 0.79 -0.8
863,385 - CA264_03685 0.79 +0.0
863,385 - CA264_03685 0.79 -0.1
863,389 + CA264_03685 0.79 +0.3
863,389 + CA264_03685 0.79 +0.3
863,390 - CA264_03685 0.79 -0.5
863,427 - CA264_03685 0.80 -0.7
863,437 + CA264_03685 0.80 -0.6
863,437 + CA264_03685 0.80 -0.4
863,437 + CA264_03685 0.80 -0.6
863,437 + CA264_03685 0.80 -0.7
863,438 - CA264_03685 0.80 -0.5
863,494 - CA264_03685 0.82 -1.2
863,494 - CA264_03685 0.82 -0.5
863,494 - CA264_03685 0.82 -0.7
863,498 - CA264_03685 0.82 +0.9
863,498 - CA264_03685 0.82 -0.3
863,602 + CA264_03685 0.84 +0.9
863,724 + CA264_03685 0.87 -0.8
863,735 + CA264_03685 0.87 +0.1
863,735 + CA264_03685 0.87 -0.8
863,756 + CA264_03685 0.88 +0.6
863,798 - CA264_03685 0.89 +0.3
863,800 - CA264_03685 0.89 +0.1
863,878 + -0.6
863,879 - +0.5
864,036 - +0.1
864,142 + -0.2
864,194 - -1.5
864,215 - +0.1
864,215 - -0.8
864,264 + -0.7
864,264 + -0.3
864,264 + -0.4
864,269 - -0.4
864,269 - -2.1
864,276 - -0.5
864,292 + -0.3
864,293 - +0.4
864,293 - -0.9
864,335 + +0.3
864,337 + +0.4
864,337 + +0.7
864,338 - -0.9
864,343 + -0.3
864,451 + CA264_03690 0.12 +0.9
864,451 + CA264_03690 0.12 +1.1
864,451 + CA264_03690 0.12 -0.5
864,495 + CA264_03690 0.15 -1.0
864,509 + CA264_03690 0.17 -0.7
864,510 - CA264_03690 0.17 -1.1
864,510 - CA264_03690 0.17 -1.4
864,512 + CA264_03690 0.17 -0.0
864,512 + CA264_03690 0.17 +0.1
864,512 + CA264_03690 0.17 -0.5
864,633 + CA264_03690 0.27 -0.2
864,634 - CA264_03690 0.27 +1.5
864,682 + CA264_03690 0.30 +0.1
864,682 + CA264_03690 0.30 -0.4
864,683 - CA264_03690 0.31 -0.8
864,683 - CA264_03690 0.31 -0.5
864,687 + CA264_03690 0.31 -0.8
864,688 - CA264_03690 0.31 -0.4
864,727 - CA264_03690 0.34 -0.3
864,941 + CA264_03690 0.51 -0.7
864,942 - CA264_03690 0.51 +0.7
864,997 - CA264_03690 0.56 +0.1
865,116 + CA264_03690 0.65 -0.6
865,129 + CA264_03690 0.66 +0.2
865,130 - CA264_03690 0.66 -0.7
865,212 - CA264_03690 0.73 +0.2
865,224 + CA264_03690 0.74 +0.9
865,224 + CA264_03690 0.74 -1.3
865,224 + CA264_03690 0.74 +1.0
865,224 + CA264_03690 0.74 -0.3
865,242 + CA264_03690 0.75 +0.2
865,243 - CA264_03690 0.76 -0.7

Or see this region's nucleotide sequence