Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03395 and CA264_03400 are separated by 237 nucleotides CA264_03400 and CA264_03405 overlap by 4 nucleotides CA264_03405 and CA264_03410 are separated by 81 nucleotides
CA264_03395: CA264_03395 - phospholipase, at 792,414 to 793,115
_03395
CA264_03400: CA264_03400 - hypothetical protein, at 793,353 to 793,886
_03400
CA264_03405: CA264_03405 - hypothetical protein, at 793,883 to 794,497
_03405
CA264_03410: CA264_03410 - glutamine amidotransferase, at 794,579 to 795,499
_03410
Position (kb)
793
794 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 792.378 kb on + strand at 792.382 kb on + strand at 792.383 kb on - strand at 792.383 kb on - strand at 792.435 kb on + strand at 792.436 kb on - strand at 792.436 kb on - strand at 792.436 kb on - strand at 792.544 kb on - strand, within CA264_03395 at 792.693 kb on + strand, within CA264_03395 at 792.707 kb on + strand, within CA264_03395 at 792.707 kb on + strand, within CA264_03395 at 792.742 kb on - strand, within CA264_03395 at 792.742 kb on - strand, within CA264_03395 at 792.777 kb on + strand, within CA264_03395 at 792.832 kb on - strand, within CA264_03395 at 792.869 kb on + strand, within CA264_03395 at 792.869 kb on + strand, within CA264_03395 at 792.903 kb on + strand, within CA264_03395 at 792.904 kb on - strand, within CA264_03395 at 792.939 kb on - strand, within CA264_03395 at 792.983 kb on + strand, within CA264_03395 at 793.028 kb on - strand, within CA264_03395 at 793.028 kb on - strand, within CA264_03395 at 793.032 kb on + strand, within CA264_03395 at 793.032 kb on + strand, within CA264_03395 at 793.033 kb on - strand, within CA264_03395 at 793.035 kb on - strand, within CA264_03395 at 793.079 kb on + strand at 793.113 kb on + strand at 793.194 kb on + strand at 793.195 kb on - strand at 793.195 kb on - strand at 793.195 kb on - strand at 793.195 kb on - strand at 793.196 kb on + strand at 793.196 kb on + strand at 793.197 kb on - strand at 793.197 kb on - strand at 793.292 kb on + strand at 793.352 kb on + strand at 793.365 kb on - strand at 793.389 kb on + strand at 793.390 kb on - strand at 793.397 kb on - strand at 793.397 kb on - strand at 793.440 kb on + strand, within CA264_03400 at 793.450 kb on - strand, within CA264_03400 at 793.483 kb on + strand, within CA264_03400 at 793.487 kb on - strand, within CA264_03400 at 793.557 kb on + strand, within CA264_03400 at 793.557 kb on + strand, within CA264_03400 at 793.558 kb on - strand, within CA264_03400 at 793.558 kb on - strand, within CA264_03400 at 793.563 kb on + strand, within CA264_03400 at 793.668 kb on - strand, within CA264_03400 at 793.844 kb on - strand at 793.892 kb on - strand at 793.903 kb on + strand at 793.904 kb on - strand at 793.906 kb on - strand at 793.929 kb on - strand at 793.968 kb on + strand, within CA264_03405 at 794.214 kb on + strand, within CA264_03405 at 794.215 kb on - strand, within CA264_03405 at 794.237 kb on + strand, within CA264_03405 at 794.237 kb on + strand, within CA264_03405 at 794.238 kb on - strand, within CA264_03405 at 794.251 kb on - strand, within CA264_03405 at 794.251 kb on - strand, within CA264_03405 at 794.255 kb on + strand, within CA264_03405 at 794.256 kb on - strand, within CA264_03405 at 794.257 kb on + strand, within CA264_03405 at 794.482 kb on + strand at 794.483 kb on - strand at 794.483 kb on - strand at 794.484 kb on + strand at 794.485 kb on - strand at 794.485 kb on - strand at 794.485 kb on - strand at 794.485 kb on - strand at 794.604 kb on - strand at 794.663 kb on + strand at 794.663 kb on + strand at 794.676 kb on - strand, within CA264_03410 at 794.720 kb on + strand, within CA264_03410 at 794.721 kb on - strand, within CA264_03410 at 794.769 kb on + strand, within CA264_03410
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 792,378 + +0.2 792,382 + +0.6 792,383 - +0.2 792,383 - -0.2 792,435 + -0.7 792,436 - +1.0 792,436 - +0.9 792,436 - -0.3 792,544 - CA264_03395 0.19 -0.8 792,693 + CA264_03395 0.40 +0.0 792,707 + CA264_03395 0.42 +1.0 792,707 + CA264_03395 0.42 -0.1 792,742 - CA264_03395 0.47 -0.7 792,742 - CA264_03395 0.47 -1.0 792,777 + CA264_03395 0.52 -0.3 792,832 - CA264_03395 0.60 -0.7 792,869 + CA264_03395 0.65 +0.0 792,869 + CA264_03395 0.65 -0.3 792,903 + CA264_03395 0.70 +0.5 792,904 - CA264_03395 0.70 -0.1 792,939 - CA264_03395 0.75 +0.9 792,983 + CA264_03395 0.81 +0.7 793,028 - CA264_03395 0.87 -0.4 793,028 - CA264_03395 0.87 -1.3 793,032 + CA264_03395 0.88 -0.3 793,032 + CA264_03395 0.88 +1.2 793,033 - CA264_03395 0.88 -0.1 793,035 - CA264_03395 0.88 +0.5 793,079 + -0.0 793,113 + -0.4 793,194 + -0.9 793,195 - -0.2 793,195 - -0.1 793,195 - +0.5 793,195 - +0.2 793,196 + +0.3 793,196 + -0.1 793,197 - -0.2 793,197 - +0.6 793,292 + -0.7 793,352 + -0.7 793,365 - -1.0 793,389 + +0.4 793,390 - +0.8 793,397 - -0.1 793,397 - -1.0 793,440 + CA264_03400 0.16 +1.0 793,450 - CA264_03400 0.18 -0.1 793,483 + CA264_03400 0.24 -1.3 793,487 - CA264_03400 0.25 -0.0 793,557 + CA264_03400 0.38 -0.2 793,557 + CA264_03400 0.38 +1.8 793,558 - CA264_03400 0.38 +0.3 793,558 - CA264_03400 0.38 +0.5 793,563 + CA264_03400 0.39 -0.5 793,668 - CA264_03400 0.59 -0.6 793,844 - +0.1 793,892 - -0.4 793,903 + +0.6 793,904 - -2.2 793,906 - -0.2 793,929 - +0.1 793,968 + CA264_03405 0.14 +0.9 794,214 + CA264_03405 0.54 -1.3 794,215 - CA264_03405 0.54 -0.1 794,237 + CA264_03405 0.58 -0.2 794,237 + CA264_03405 0.58 -0.2 794,238 - CA264_03405 0.58 -0.5 794,251 - CA264_03405 0.60 -0.3 794,251 - CA264_03405 0.60 -0.2 794,255 + CA264_03405 0.60 -0.4 794,256 - CA264_03405 0.61 -0.6 794,257 + CA264_03405 0.61 -0.5 794,482 + +0.6 794,483 - -0.1 794,483 - +0.7 794,484 + +0.5 794,485 - -1.2 794,485 - -0.2 794,485 - +0.6 794,485 - +0.5 794,604 - -1.0 794,663 + -0.2 794,663 + +2.2 794,676 - CA264_03410 0.11 +0.4 794,720 + CA264_03410 0.15 -0.3 794,721 - CA264_03410 0.15 -0.1 794,769 + CA264_03410 0.21 +0.4
Or see this region's nucleotide sequence