Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03115 and CA264_03120 are separated by 152 nucleotides CA264_03120 and CA264_03125 are separated by 249 nucleotides CA264_03125 and CA264_03130 are separated by 160 nucleotides
CA264_03115: CA264_03115 - hypothetical protein, at 727,435 to 728,061
_03115
CA264_03120: CA264_03120 - protoporphyrinogen IX oxidase, at 728,214 to 728,750
_03120
CA264_03125: CA264_03125 - oxygen-independent coproporphyrinogen III oxidase, at 729,000 to 730,376
_03125
CA264_03130: CA264_03130 - alanine racemase, at 730,537 to 731,655
_03130
Position (kb) 728
729
730
731 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 728.061 kb on + strand at 728.062 kb on - strand at 728.082 kb on - strand at 728.733 kb on + strand at 728.750 kb on + strand at 728.775 kb on - strand at 728.882 kb on - strand at 728.882 kb on - strand at 729.029 kb on + strand at 729.124 kb on + strand at 729.125 kb on - strand at 729.181 kb on + strand, within CA264_03125 at 729.319 kb on + strand, within CA264_03125 at 729.336 kb on + strand, within CA264_03125 at 729.336 kb on + strand, within CA264_03125 at 729.336 kb on + strand, within CA264_03125 at 729.337 kb on - strand, within CA264_03125 at 729.348 kb on - strand, within CA264_03125 at 729.463 kb on + strand, within CA264_03125 at 729.464 kb on - strand, within CA264_03125 at 729.511 kb on + strand, within CA264_03125 at 729.512 kb on - strand, within CA264_03125 at 729.547 kb on + strand, within CA264_03125 at 729.632 kb on - strand, within CA264_03125 at 729.632 kb on - strand, within CA264_03125 at 729.632 kb on - strand, within CA264_03125 at 729.638 kb on - strand, within CA264_03125 at 729.638 kb on - strand, within CA264_03125 at 729.721 kb on + strand, within CA264_03125 at 729.725 kb on + strand, within CA264_03125 at 729.726 kb on - strand, within CA264_03125 at 729.747 kb on - strand, within CA264_03125 at 729.747 kb on - strand, within CA264_03125 at 729.749 kb on - strand, within CA264_03125 at 730.106 kb on - strand, within CA264_03125 at 730.157 kb on - strand, within CA264_03125 at 730.264 kb on - strand at 730.330 kb on + strand at 730.458 kb on - strand at 730.458 kb on - strand at 730.532 kb on - strand at 730.545 kb on + strand at 730.545 kb on + strand at 730.545 kb on + strand at 730.546 kb on - strand at 730.555 kb on - strand at 730.560 kb on - strand at 730.628 kb on + strand at 730.647 kb on + strand at 730.762 kb on - strand, within CA264_03130 at 730.954 kb on + strand, within CA264_03130 at 730.985 kb on + strand, within CA264_03130 at 731.037 kb on + strand, within CA264_03130 at 731.038 kb on - strand, within CA264_03130 at 731.041 kb on + strand, within CA264_03130 at 731.041 kb on + strand, within CA264_03130 at 731.041 kb on + strand, within CA264_03130 at 731.042 kb on - strand, within CA264_03130 at 731.042 kb on - strand, within CA264_03130 at 731.042 kb on - strand, within CA264_03130 at 731.059 kb on + strand, within CA264_03130 at 731.060 kb on - strand, within CA264_03130 at 731.121 kb on + strand, within CA264_03130 at 731.121 kb on + strand, within CA264_03130 at 731.121 kb on + strand, within CA264_03130 at 731.275 kb on - strand, within CA264_03130 at 731.286 kb on + strand, within CA264_03130 at 731.287 kb on - strand, within CA264_03130 at 731.287 kb on - strand, within CA264_03130 at 731.287 kb on - strand, within CA264_03130 at 731.338 kb on + strand, within CA264_03130 at 731.371 kb on - strand, within CA264_03130
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 728,061 + -0.3 728,062 - -0.2 728,082 - -0.8 728,733 + -0.7 728,750 + +1.8 728,775 - +2.5 728,882 - +0.3 728,882 - -0.4 729,029 + -1.2 729,124 + -0.8 729,125 - -0.1 729,181 + CA264_03125 0.13 -0.7 729,319 + CA264_03125 0.23 -0.8 729,336 + CA264_03125 0.24 -1.7 729,336 + CA264_03125 0.24 -1.1 729,336 + CA264_03125 0.24 -1.1 729,337 - CA264_03125 0.24 -0.7 729,348 - CA264_03125 0.25 +0.7 729,463 + CA264_03125 0.34 -1.2 729,464 - CA264_03125 0.34 -0.7 729,511 + CA264_03125 0.37 -0.9 729,512 - CA264_03125 0.37 -1.0 729,547 + CA264_03125 0.40 -3.0 729,632 - CA264_03125 0.46 +0.3 729,632 - CA264_03125 0.46 +0.4 729,632 - CA264_03125 0.46 -1.0 729,638 - CA264_03125 0.46 -1.0 729,638 - CA264_03125 0.46 -0.2 729,721 + CA264_03125 0.52 -0.8 729,725 + CA264_03125 0.53 -2.2 729,726 - CA264_03125 0.53 -0.5 729,747 - CA264_03125 0.54 -0.2 729,747 - CA264_03125 0.54 -0.4 729,749 - CA264_03125 0.54 -1.4 730,106 - CA264_03125 0.80 -0.1 730,157 - CA264_03125 0.84 +0.0 730,264 - -0.2 730,330 + -0.9 730,458 - -0.8 730,458 - -1.2 730,532 - -1.3 730,545 + -0.2 730,545 + +0.7 730,545 + +0.4 730,546 - +0.3 730,555 - +1.3 730,560 - -1.1 730,628 + -0.8 730,647 + -0.4 730,762 - CA264_03130 0.20 +0.9 730,954 + CA264_03130 0.37 -0.4 730,985 + CA264_03130 0.40 -1.0 731,037 + CA264_03130 0.45 -0.7 731,038 - CA264_03130 0.45 -0.0 731,041 + CA264_03130 0.45 +0.7 731,041 + CA264_03130 0.45 -0.0 731,041 + CA264_03130 0.45 +0.1 731,042 - CA264_03130 0.45 -0.7 731,042 - CA264_03130 0.45 -0.2 731,042 - CA264_03130 0.45 +0.0 731,059 + CA264_03130 0.47 -0.1 731,060 - CA264_03130 0.47 +0.1 731,121 + CA264_03130 0.52 -0.7 731,121 + CA264_03130 0.52 -0.5 731,121 + CA264_03130 0.52 -0.5 731,275 - CA264_03130 0.66 -0.1 731,286 + CA264_03130 0.67 -0.4 731,287 - CA264_03130 0.67 +0.4 731,287 - CA264_03130 0.67 -1.8 731,287 - CA264_03130 0.67 +0.0 731,338 + CA264_03130 0.72 +0.9 731,371 - CA264_03130 0.75 -0.3
Or see this region's nucleotide sequence