Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01110

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_01100 and CA264_01105 are separated by 18 nucleotidesCA264_01105 and CA264_01110 are separated by 228 nucleotidesCA264_01110 and CA264_01115 are separated by 25 nucleotides CA264_01100: CA264_01100 - Clp protease ClpS, at 242,006 to 242,293 _01100 CA264_01105: CA264_01105 - recombination protein RecR, at 242,312 to 242,920 _01105 CA264_01110: CA264_01110 - hypothetical protein, at 243,149 to 245,215 _01110 CA264_01115: CA264_01115 - hypothetical protein, at 245,241 to 246,245 _01115 Position (kb) 243 244 245 246Strain fitness (log2 ratio) -2 -1 0 1 2at 242.179 kb on + strand, within CA264_01100at 242.210 kb on - strand, within CA264_01100at 242.214 kb on + strand, within CA264_01100at 242.229 kb on - strand, within CA264_01100at 242.246 kb on - strand, within CA264_01100at 242.285 kb on - strandat 242.286 kb on + strandat 242.287 kb on - strandat 242.291 kb on + strandat 242.292 kb on - strandat 242.292 kb on - strandat 242.305 kb on - strandat 242.305 kb on - strandat 242.612 kb on + strand, within CA264_01105at 242.624 kb on + strand, within CA264_01105at 242.664 kb on + strand, within CA264_01105at 242.665 kb on - strand, within CA264_01105at 242.665 kb on - strand, within CA264_01105at 242.736 kb on + strand, within CA264_01105at 242.938 kb on + strandat 243.072 kb on - strandat 243.149 kb on - strandat 243.184 kb on + strandat 243.184 kb on + strandat 243.184 kb on + strandat 243.184 kb on + strandat 243.185 kb on - strandat 243.185 kb on - strandat 243.213 kb on + strandat 243.214 kb on - strandat 243.234 kb on + strandat 243.234 kb on + strandat 243.235 kb on - strandat 243.239 kb on - strandat 243.254 kb on + strandat 243.257 kb on - strandat 243.437 kb on + strand, within CA264_01110at 243.437 kb on + strand, within CA264_01110at 243.437 kb on + strand, within CA264_01110at 243.438 kb on - strand, within CA264_01110at 243.438 kb on - strand, within CA264_01110at 243.451 kb on - strand, within CA264_01110at 243.534 kb on - strand, within CA264_01110at 243.572 kb on - strand, within CA264_01110at 243.606 kb on - strand, within CA264_01110at 243.606 kb on - strand, within CA264_01110at 243.635 kb on + strand, within CA264_01110at 243.653 kb on + strand, within CA264_01110at 243.653 kb on + strand, within CA264_01110at 243.653 kb on + strand, within CA264_01110at 243.653 kb on + strand, within CA264_01110at 243.737 kb on - strand, within CA264_01110at 243.797 kb on - strand, within CA264_01110at 243.841 kb on + strand, within CA264_01110at 243.845 kb on + strand, within CA264_01110at 243.846 kb on - strand, within CA264_01110at 243.846 kb on - strand, within CA264_01110at 243.846 kb on - strand, within CA264_01110at 243.873 kb on + strand, within CA264_01110at 243.951 kb on - strand, within CA264_01110at 243.951 kb on - strand, within CA264_01110at 243.975 kb on + strand, within CA264_01110at 244.017 kb on + strand, within CA264_01110at 244.027 kb on + strand, within CA264_01110at 244.077 kb on - strand, within CA264_01110at 244.077 kb on - strand, within CA264_01110at 244.150 kb on - strand, within CA264_01110at 244.150 kb on - strand, within CA264_01110at 244.165 kb on + strand, within CA264_01110at 244.165 kb on + strand, within CA264_01110at 244.165 kb on + strand, within CA264_01110at 244.166 kb on - strand, within CA264_01110at 244.169 kb on + strand, within CA264_01110at 244.169 kb on + strand, within CA264_01110at 244.170 kb on - strand, within CA264_01110at 244.170 kb on - strand, within CA264_01110at 244.172 kb on + strand, within CA264_01110at 244.172 kb on + strand, within CA264_01110at 244.172 kb on + strand, within CA264_01110at 244.173 kb on - strand, within CA264_01110at 244.276 kb on + strand, within CA264_01110at 244.277 kb on - strand, within CA264_01110at 244.277 kb on - strand, within CA264_01110at 244.334 kb on + strand, within CA264_01110at 244.335 kb on - strand, within CA264_01110at 244.335 kb on - strand, within CA264_01110at 244.335 kb on - strand, within CA264_01110at 244.383 kb on + strand, within CA264_01110at 244.384 kb on - strand, within CA264_01110at 244.407 kb on - strand, within CA264_01110at 244.464 kb on + strand, within CA264_01110at 244.464 kb on + strand, within CA264_01110at 244.531 kb on + strand, within CA264_01110at 244.532 kb on - strand, within CA264_01110at 244.565 kb on + strand, within CA264_01110at 244.574 kb on + strand, within CA264_01110at 244.574 kb on + strand, within CA264_01110at 244.625 kb on - strand, within CA264_01110at 244.656 kb on - strand, within CA264_01110at 244.658 kb on + strand, within CA264_01110at 244.659 kb on - strand, within CA264_01110at 244.659 kb on - strand, within CA264_01110at 244.672 kb on - strand, within CA264_01110at 244.762 kb on - strand, within CA264_01110at 244.803 kb on + strand, within CA264_01110at 244.803 kb on + strand, within CA264_01110at 244.808 kb on + strand, within CA264_01110at 244.810 kb on + strand, within CA264_01110at 244.887 kb on - strand, within CA264_01110at 244.887 kb on - strand, within CA264_01110at 244.956 kb on + strand, within CA264_01110at 244.956 kb on + strand, within CA264_01110at 244.956 kb on + strand, within CA264_01110at 244.957 kb on - strand, within CA264_01110at 244.957 kb on - strand, within CA264_01110at 245.017 kb on - strandat 245.017 kb on - strandat 245.057 kb on + strandat 245.097 kb on - strandat 245.121 kb on - strandat 245.150 kb on + strandat 245.157 kb on - strandat 245.195 kb on + strandat 245.248 kb on + strandat 245.248 kb on + strandat 245.248 kb on + strandat 245.249 kb on - strandat 245.252 kb on + strandat 245.252 kb on + strandat 245.253 kb on - strandat 245.253 kb on - strandat 245.254 kb on + strandat 245.254 kb on + strandat 245.255 kb on - strandat 245.255 kb on - strandat 245.314 kb on - strandat 245.314 kb on - strandat 245.323 kb on - strandat 245.338 kb on - strandat 245.346 kb on - strand, within CA264_01115at 245.346 kb on - strand, within CA264_01115at 245.365 kb on + strand, within CA264_01115at 245.365 kb on + strand, within CA264_01115at 245.385 kb on - strand, within CA264_01115at 245.466 kb on + strand, within CA264_01115at 245.580 kb on - strand, within CA264_01115at 245.638 kb on - strand, within CA264_01115at 245.668 kb on + strand, within CA264_01115at 245.668 kb on + strand, within CA264_01115at 245.669 kb on - strand, within CA264_01115at 245.669 kb on - strand, within CA264_01115at 245.669 kb on - strand, within CA264_01115at 245.669 kb on - strand, within CA264_01115at 245.824 kb on - strand, within CA264_01115at 245.873 kb on + strand, within CA264_01115at 245.902 kb on - strand, within CA264_01115at 246.030 kb on + strand, within CA264_01115at 246.031 kb on - strand, within CA264_01115at 246.061 kb on - strand, within CA264_01115at 246.078 kb on + strand, within CA264_01115at 246.078 kb on + strand, within CA264_01115at 246.078 kb on + strand, within CA264_01115at 246.078 kb on + strand, within CA264_01115at 246.133 kb on - strand, within CA264_01115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
remove
242,179 + CA264_01100 0.60 -1.2
242,210 - CA264_01100 0.71 +0.6
242,214 + CA264_01100 0.72 -0.5
242,229 - CA264_01100 0.77 -0.9
242,246 - CA264_01100 0.83 +2.0
242,285 - +0.2
242,286 + +0.6
242,287 - +0.3
242,291 + -0.5
242,292 - +0.4
242,292 - -0.4
242,305 - -1.2
242,305 - +0.9
242,612 + CA264_01105 0.49 +1.0
242,624 + CA264_01105 0.51 -1.1
242,664 + CA264_01105 0.58 +0.1
242,665 - CA264_01105 0.58 -0.6
242,665 - CA264_01105 0.58 -2.4
242,736 + CA264_01105 0.70 +0.6
242,938 + +0.5
243,072 - -1.4
243,149 - -0.5
243,184 + +1.1
243,184 + -0.2
243,184 + +0.1
243,184 + +0.3
243,185 - -0.5
243,185 - -0.6
243,213 + +1.0
243,214 - -0.2
243,234 + -1.0
243,234 + -0.8
243,235 - -0.2
243,239 - -0.8
243,254 + -0.2
243,257 - -0.0
243,437 + CA264_01110 0.14 +0.2
243,437 + CA264_01110 0.14 +0.1
243,437 + CA264_01110 0.14 -0.4
243,438 - CA264_01110 0.14 -0.6
243,438 - CA264_01110 0.14 -0.3
243,451 - CA264_01110 0.15 -0.6
243,534 - CA264_01110 0.19 +0.2
243,572 - CA264_01110 0.20 -0.1
243,606 - CA264_01110 0.22 -0.2
243,606 - CA264_01110 0.22 -2.6
243,635 + CA264_01110 0.24 -0.2
243,653 + CA264_01110 0.24 -1.6
243,653 + CA264_01110 0.24 +0.1
243,653 + CA264_01110 0.24 -1.1
243,653 + CA264_01110 0.24 +1.2
243,737 - CA264_01110 0.28 +0.4
243,797 - CA264_01110 0.31 +0.4
243,841 + CA264_01110 0.33 +0.6
243,845 + CA264_01110 0.34 +1.3
243,846 - CA264_01110 0.34 -0.8
243,846 - CA264_01110 0.34 -0.4
243,846 - CA264_01110 0.34 +1.3
243,873 + CA264_01110 0.35 +1.0
243,951 - CA264_01110 0.39 -0.3
243,951 - CA264_01110 0.39 +1.2
243,975 + CA264_01110 0.40 -0.3
244,017 + CA264_01110 0.42 -0.6
244,027 + CA264_01110 0.42 +0.1
244,077 - CA264_01110 0.45 -0.4
244,077 - CA264_01110 0.45 +0.5
244,150 - CA264_01110 0.48 +0.9
244,150 - CA264_01110 0.48 -0.2
244,165 + CA264_01110 0.49 -0.7
244,165 + CA264_01110 0.49 -0.4
244,165 + CA264_01110 0.49 +0.4
244,166 - CA264_01110 0.49 +0.4
244,169 + CA264_01110 0.49 +0.9
244,169 + CA264_01110 0.49 -0.1
244,170 - CA264_01110 0.49 -0.5
244,170 - CA264_01110 0.49 +0.2
244,172 + CA264_01110 0.49 -1.3
244,172 + CA264_01110 0.49 +0.1
244,172 + CA264_01110 0.49 -0.1
244,173 - CA264_01110 0.50 -0.4
244,276 + CA264_01110 0.55 +1.0
244,277 - CA264_01110 0.55 +0.9
244,277 - CA264_01110 0.55 -0.1
244,334 + CA264_01110 0.57 -0.1
244,335 - CA264_01110 0.57 -0.1
244,335 - CA264_01110 0.57 -1.9
244,335 - CA264_01110 0.57 +0.1
244,383 + CA264_01110 0.60 -0.7
244,384 - CA264_01110 0.60 +0.6
244,407 - CA264_01110 0.61 +0.3
244,464 + CA264_01110 0.64 +0.0
244,464 + CA264_01110 0.64 -0.5
244,531 + CA264_01110 0.67 -0.7
244,532 - CA264_01110 0.67 -0.8
244,565 + CA264_01110 0.69 -0.4
244,574 + CA264_01110 0.69 -0.7
244,574 + CA264_01110 0.69 -0.3
244,625 - CA264_01110 0.71 -0.1
244,656 - CA264_01110 0.73 +0.4
244,658 + CA264_01110 0.73 +1.4
244,659 - CA264_01110 0.73 +0.2
244,659 - CA264_01110 0.73 -0.3
244,672 - CA264_01110 0.74 -0.7
244,762 - CA264_01110 0.78 -0.5
244,803 + CA264_01110 0.80 +0.2
244,803 + CA264_01110 0.80 -0.2
244,808 + CA264_01110 0.80 +0.6
244,810 + CA264_01110 0.80 -2.3
244,887 - CA264_01110 0.84 -1.7
244,887 - CA264_01110 0.84 +0.6
244,956 + CA264_01110 0.87 -0.1
244,956 + CA264_01110 0.87 -0.1
244,956 + CA264_01110 0.87 -1.1
244,957 - CA264_01110 0.87 -0.2
244,957 - CA264_01110 0.87 -2.0
245,017 - -0.7
245,017 - -0.2
245,057 + +0.6
245,097 - -0.3
245,121 - -0.7
245,150 + -0.7
245,157 - -0.6
245,195 + +0.2
245,248 + -1.2
245,248 + -1.1
245,248 + +0.6
245,249 - -0.1
245,252 + -1.0
245,252 + -0.1
245,253 - +0.6
245,253 - +0.1
245,254 + -0.7
245,254 + -0.1
245,255 - -0.2
245,255 - +0.1
245,314 - +0.1
245,314 - +0.6
245,323 - -0.2
245,338 - +0.7
245,346 - CA264_01115 0.10 -0.7
245,346 - CA264_01115 0.10 +0.3
245,365 + CA264_01115 0.12 +0.8
245,365 + CA264_01115 0.12 +0.1
245,385 - CA264_01115 0.14 +0.1
245,466 + CA264_01115 0.22 -0.4
245,580 - CA264_01115 0.34 -0.6
245,638 - CA264_01115 0.40 -0.5
245,668 + CA264_01115 0.42 +0.3
245,668 + CA264_01115 0.42 -0.6
245,669 - CA264_01115 0.43 +0.3
245,669 - CA264_01115 0.43 -1.3
245,669 - CA264_01115 0.43 -0.2
245,669 - CA264_01115 0.43 +0.4
245,824 - CA264_01115 0.58 +0.5
245,873 + CA264_01115 0.63 -2.2
245,902 - CA264_01115 0.66 +0.2
246,030 + CA264_01115 0.79 +0.0
246,031 - CA264_01115 0.79 -0.5
246,061 - CA264_01115 0.82 -0.2
246,078 + CA264_01115 0.83 -0.1
246,078 + CA264_01115 0.83 +0.6
246,078 + CA264_01115 0.83 +0.3
246,078 + CA264_01115 0.83 -0.5
246,133 - CA264_01115 0.89 -1.3

Or see this region's nucleotide sequence