Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00915 and CA264_00920 are separated by 46 nucleotides CA264_00920 and CA264_00925 are separated by 212 nucleotides CA264_00925 and CA264_00930 are separated by 210 nucleotides
CA264_00915: CA264_00915 - hypothetical protein, at 195,807 to 197,114
_00915
CA264_00920: CA264_00920 - acetyltransferase, at 197,161 to 197,796
_00920
CA264_00925: CA264_00925 - hypothetical protein, at 198,009 to 198,977
_00925
CA264_00930: CA264_00930 - phosphorylase, at 199,188 to 200,045
_00930
Position (kb) 198
199 Strain fitness (log2 ratio) -1
0
1 at 197.041 kb on + strand at 197.150 kb on - strand at 197.180 kb on + strand at 197.180 kb on + strand at 197.181 kb on - strand at 197.181 kb on - strand at 197.183 kb on + strand at 197.184 kb on - strand at 197.184 kb on - strand at 197.184 kb on - strand at 197.184 kb on - strand at 197.184 kb on - strand at 197.213 kb on + strand at 197.213 kb on + strand at 197.213 kb on + strand at 197.213 kb on + strand at 197.213 kb on + strand at 197.214 kb on - strand at 197.218 kb on - strand at 197.218 kb on - strand at 197.218 kb on - strand at 197.219 kb on + strand at 197.219 kb on + strand at 197.220 kb on - strand at 197.429 kb on + strand, within CA264_00920 at 197.429 kb on + strand, within CA264_00920 at 197.599 kb on + strand, within CA264_00920 at 197.640 kb on + strand, within CA264_00920 at 197.640 kb on + strand, within CA264_00920 at 197.908 kb on + strand at 197.908 kb on + strand at 197.909 kb on - strand at 197.975 kb on - strand at 197.978 kb on + strand at 197.990 kb on - strand at 198.008 kb on + strand at 198.009 kb on - strand at 198.028 kb on + strand at 198.029 kb on - strand at 198.029 kb on - strand at 198.036 kb on + strand at 198.039 kb on + strand at 198.040 kb on - strand at 198.040 kb on - strand at 198.264 kb on - strand, within CA264_00925 at 198.365 kb on + strand, within CA264_00925 at 198.397 kb on + strand, within CA264_00925 at 198.513 kb on + strand, within CA264_00925 at 198.514 kb on - strand, within CA264_00925 at 198.515 kb on + strand, within CA264_00925 at 198.606 kb on + strand, within CA264_00925 at 198.606 kb on + strand, within CA264_00925 at 198.634 kb on - strand, within CA264_00925 at 198.676 kb on - strand, within CA264_00925 at 198.676 kb on - strand, within CA264_00925 at 198.676 kb on - strand, within CA264_00925 at 198.676 kb on - strand, within CA264_00925 at 198.886 kb on - strand at 198.967 kb on + strand at 198.973 kb on + strand at 198.973 kb on + strand at 198.974 kb on - strand at 198.975 kb on + strand at 198.979 kb on + strand at 198.980 kb on - strand at 199.049 kb on - strand at 199.049 kb on - strand at 199.137 kb on + strand at 199.138 kb on - strand at 199.194 kb on - strand at 199.194 kb on - strand at 199.217 kb on + strand at 199.384 kb on - strand, within CA264_00930 at 199.384 kb on - strand, within CA264_00930 at 199.385 kb on + strand, within CA264_00930 at 199.386 kb on - strand, within CA264_00930 at 199.656 kb on - strand, within CA264_00930 at 199.658 kb on - strand, within CA264_00930 at 199.701 kb on + strand, within CA264_00930 at 199.739 kb on - strand, within CA264_00930 at 199.769 kb on + strand, within CA264_00930 at 199.769 kb on + strand, within CA264_00930 at 199.770 kb on - strand, within CA264_00930 at 199.846 kb on - strand, within CA264_00930 at 199.846 kb on - strand, within CA264_00930 at 199.846 kb on - strand, within CA264_00930 at 199.878 kb on - strand, within CA264_00930 at 199.908 kb on + strand, within CA264_00930 at 199.955 kb on + strand, within CA264_00930 at 199.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 197,041 + +0.4 197,150 - +0.3 197,180 + +0.2 197,180 + -1.4 197,181 - -0.4 197,181 - -0.9 197,183 + -1.1 197,184 - -1.1 197,184 - -0.8 197,184 - -1.2 197,184 - -1.1 197,184 - -1.0 197,213 + +0.2 197,213 + -0.3 197,213 + +0.0 197,213 + -0.2 197,213 + -0.2 197,214 - -1.7 197,218 - +0.9 197,218 - -0.9 197,218 - -0.8 197,219 + -1.4 197,219 + -1.3 197,220 - -1.0 197,429 + CA264_00920 0.42 -0.7 197,429 + CA264_00920 0.42 -0.9 197,599 + CA264_00920 0.69 -0.6 197,640 + CA264_00920 0.75 -1.1 197,640 + CA264_00920 0.75 -1.3 197,908 + -1.0 197,908 + -0.6 197,909 - -0.9 197,975 - +0.2 197,978 + -0.4 197,990 - -0.3 198,008 + -1.0 198,009 - +0.1 198,028 + -1.1 198,029 - -0.6 198,029 - -0.3 198,036 + -0.5 198,039 + +0.2 198,040 - -0.2 198,040 - -0.6 198,264 - CA264_00925 0.26 -0.0 198,365 + CA264_00925 0.37 -0.6 198,397 + CA264_00925 0.40 -1.4 198,513 + CA264_00925 0.52 -1.2 198,514 - CA264_00925 0.52 -0.5 198,515 + CA264_00925 0.52 -0.3 198,606 + CA264_00925 0.62 -1.7 198,606 + CA264_00925 0.62 -0.1 198,634 - CA264_00925 0.64 -0.2 198,676 - CA264_00925 0.69 -0.5 198,676 - CA264_00925 0.69 -0.8 198,676 - CA264_00925 0.69 +0.1 198,676 - CA264_00925 0.69 -0.1 198,886 - -1.0 198,967 + +0.0 198,973 + -0.6 198,973 + -0.7 198,974 - -0.8 198,975 + -0.9 198,979 + +1.3 198,980 - -0.4 199,049 - -0.6 199,049 - -0.1 199,137 + +0.6 199,138 - -1.5 199,194 - -0.6 199,194 - -0.3 199,217 + +0.3 199,384 - CA264_00930 0.23 +0.7 199,384 - CA264_00930 0.23 -0.3 199,385 + CA264_00930 0.23 +0.6 199,386 - CA264_00930 0.23 +0.0 199,656 - CA264_00930 0.55 -1.0 199,658 - CA264_00930 0.55 -0.8 199,701 + CA264_00930 0.60 -0.8 199,739 - CA264_00930 0.64 -1.5 199,769 + CA264_00930 0.68 -0.9 199,769 + CA264_00930 0.68 +1.1 199,770 - CA264_00930 0.68 +0.1 199,846 - CA264_00930 0.77 +0.5 199,846 - CA264_00930 0.77 -0.4 199,846 - CA264_00930 0.77 -0.8 199,878 - CA264_00930 0.80 +0.2 199,908 + CA264_00930 0.84 +1.1 199,955 + CA264_00930 0.89 +0.2 199,961 - +1.2
Or see this region's nucleotide sequence