Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00820 and CA264_00825 are separated by 800 nucleotides CA264_00825 and CA264_00830 are separated by 252 nucleotides CA264_00830 and CA264_00835 are separated by 205 nucleotides
CA264_00820: CA264_00820 - saccharopine dehydrogenase, at 174,502 to 175,851
_00820
CA264_00825: CA264_00825 - methyltransferase, at 176,652 to 177,368
_00825
CA264_00830: CA264_00830 - ribonuclease HI, at 177,621 to 178,091
_00830
CA264_00835: CA264_00835 - hypothetical protein, at 178,297 to 178,857
_00835
Position (kb) 176
177
178 Strain fitness (log2 ratio) -2
-1
0
1
2 at 175.722 kb on - strand at 175.758 kb on + strand at 175.762 kb on + strand at 175.775 kb on - strand at 175.775 kb on - strand at 175.775 kb on - strand at 175.810 kb on - strand at 175.836 kb on - strand at 175.856 kb on - strand at 175.856 kb on - strand at 175.907 kb on - strand at 175.915 kb on + strand at 175.916 kb on - strand at 175.916 kb on - strand at 175.943 kb on + strand at 175.944 kb on - strand at 175.955 kb on + strand at 175.978 kb on + strand at 176.033 kb on + strand at 176.033 kb on + strand at 176.121 kb on + strand at 176.122 kb on - strand at 176.122 kb on - strand at 176.123 kb on + strand at 176.123 kb on + strand at 176.123 kb on + strand at 176.123 kb on + strand at 176.124 kb on - strand at 176.124 kb on - strand at 176.141 kb on + strand at 176.142 kb on - strand at 176.142 kb on - strand at 176.180 kb on + strand at 176.186 kb on + strand at 176.186 kb on + strand at 176.186 kb on + strand at 176.186 kb on + strand at 176.190 kb on + strand at 176.257 kb on - strand at 176.257 kb on - strand at 176.264 kb on + strand at 176.265 kb on - strand at 176.277 kb on + strand at 176.280 kb on + strand at 176.281 kb on - strand at 176.284 kb on + strand at 176.284 kb on + strand at 176.284 kb on + strand at 176.285 kb on - strand at 176.285 kb on - strand at 176.285 kb on - strand at 176.285 kb on - strand at 176.289 kb on + strand at 176.289 kb on + strand at 176.290 kb on - strand at 176.290 kb on - strand at 176.290 kb on - strand at 176.291 kb on + strand at 176.291 kb on + strand at 176.292 kb on - strand at 176.292 kb on - strand at 176.292 kb on - strand at 176.292 kb on - strand at 176.311 kb on + strand at 176.370 kb on + strand at 176.429 kb on - strand at 176.429 kb on - strand at 176.437 kb on - strand at 176.437 kb on - strand at 176.492 kb on + strand at 176.522 kb on + strand at 176.525 kb on + strand at 176.525 kb on + strand at 176.525 kb on + strand at 176.526 kb on - strand at 176.529 kb on + strand at 176.530 kb on - strand at 176.633 kb on + strand at 176.665 kb on + strand at 176.666 kb on - strand at 176.666 kb on - strand at 176.666 kb on - strand at 176.666 kb on - strand at 176.668 kb on + strand at 176.699 kb on + strand at 176.699 kb on + strand at 176.700 kb on - strand at 176.701 kb on + strand at 176.701 kb on + strand at 176.702 kb on - strand at 176.729 kb on - strand, within CA264_00825 at 176.729 kb on - strand, within CA264_00825 at 176.729 kb on - strand, within CA264_00825 at 176.838 kb on + strand, within CA264_00825 at 176.899 kb on + strand, within CA264_00825 at 176.900 kb on - strand, within CA264_00825 at 176.901 kb on + strand, within CA264_00825 at 176.945 kb on + strand, within CA264_00825 at 176.946 kb on - strand, within CA264_00825 at 177.049 kb on + strand, within CA264_00825 at 177.180 kb on + strand, within CA264_00825 at 177.271 kb on - strand, within CA264_00825 at 177.274 kb on + strand, within CA264_00825 at 177.275 kb on - strand, within CA264_00825 at 177.320 kb on + strand at 177.320 kb on + strand at 177.356 kb on - strand at 177.491 kb on + strand at 177.491 kb on + strand at 177.537 kb on + strand at 177.538 kb on - strand at 177.538 kb on - strand at 177.559 kb on + strand at 177.593 kb on + strand at 177.594 kb on - strand at 177.622 kb on + strand at 177.641 kb on - strand at 178.081 kb on - strand at 178.081 kb on - strand at 178.123 kb on + strand at 178.161 kb on + strand at 178.162 kb on - strand at 178.170 kb on + strand at 178.170 kb on + strand at 178.170 kb on + strand at 178.170 kb on + strand at 178.171 kb on - strand at 178.177 kb on - strand at 178.198 kb on + strand at 178.199 kb on - strand at 178.215 kb on + strand at 178.259 kb on - strand at 178.291 kb on + strand at 178.301 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 175,722 - +0.1 175,758 + +0.7 175,762 + -1.5 175,775 - +1.3 175,775 - -0.6 175,775 - +0.1 175,810 - +1.0 175,836 - +0.5 175,856 - -0.2 175,856 - +0.0 175,907 - -0.1 175,915 + +1.0 175,916 - -0.1 175,916 - +0.7 175,943 + -0.1 175,944 - -0.2 175,955 + +0.3 175,978 + -0.0 176,033 + +2.0 176,033 + +1.5 176,121 + +1.0 176,122 - +0.2 176,122 - -0.0 176,123 + +1.6 176,123 + +0.3 176,123 + -0.2 176,123 + +0.9 176,124 - +0.2 176,124 - -0.4 176,141 + +0.2 176,142 - +0.6 176,142 - -0.8 176,180 + -0.7 176,186 + -0.2 176,186 + -0.0 176,186 + +0.4 176,186 + -0.0 176,190 + -1.5 176,257 - -0.4 176,257 - +0.4 176,264 + +0.3 176,265 - +0.3 176,277 + +0.2 176,280 + +0.3 176,281 - +0.2 176,284 + +0.3 176,284 + +0.2 176,284 + -1.3 176,285 - +0.1 176,285 - -0.4 176,285 - -0.6 176,285 - -0.1 176,289 + +0.6 176,289 + +1.6 176,290 - -0.5 176,290 - +0.2 176,290 - +0.2 176,291 + +0.4 176,291 + -1.0 176,292 - +0.4 176,292 - -1.0 176,292 - +0.3 176,292 - -0.2 176,311 + -0.3 176,370 + +0.2 176,429 - +1.1 176,429 - +0.3 176,437 - -0.5 176,437 - +0.2 176,492 + +0.6 176,522 + +0.5 176,525 + +0.2 176,525 + +0.6 176,525 + -0.2 176,526 - +0.8 176,529 + +0.1 176,530 - +1.0 176,633 + -1.0 176,665 + +0.8 176,666 - -0.4 176,666 - +0.4 176,666 - +0.3 176,666 - -1.0 176,668 + +0.0 176,699 + -0.0 176,699 + +0.1 176,700 - +0.5 176,701 + +0.6 176,701 + +0.6 176,702 - +0.3 176,729 - CA264_00825 0.11 -1.3 176,729 - CA264_00825 0.11 +1.6 176,729 - CA264_00825 0.11 -0.1 176,838 + CA264_00825 0.26 -0.2 176,899 + CA264_00825 0.34 +1.3 176,900 - CA264_00825 0.35 -0.6 176,901 + CA264_00825 0.35 +0.6 176,945 + CA264_00825 0.41 -0.9 176,946 - CA264_00825 0.41 +0.2 177,049 + CA264_00825 0.55 +0.1 177,180 + CA264_00825 0.74 +0.4 177,271 - CA264_00825 0.86 -0.8 177,274 + CA264_00825 0.87 +1.3 177,275 - CA264_00825 0.87 +0.4 177,320 + -0.4 177,320 + +0.0 177,356 - +0.3 177,491 + +0.1 177,491 + -1.1 177,537 + -0.2 177,538 - -0.0 177,538 - -0.6 177,559 + -0.0 177,593 + -0.1 177,594 - +2.3 177,622 + +0.5 177,641 - +1.6 178,081 - -2.0 178,081 - -0.8 178,123 + -0.0 178,161 + +0.5 178,162 - -0.2 178,170 + +0.3 178,170 + +0.2 178,170 + -1.7 178,170 + +1.5 178,171 - -0.7 178,177 - -0.0 178,198 + +0.9 178,199 - +0.0 178,215 + +0.0 178,259 - -0.7 178,291 + -0.0 178,301 - +1.4
Or see this region's nucleotide sequence