Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00160 and CA264_00165 are separated by 9 nucleotides CA264_00165 and CA264_00170 overlap by 1 nucleotides CA264_00170 and CA264_00175 are separated by 57 nucleotides
CA264_00160: CA264_00160 - hypothetical protein, at 38,911 to 41,952
_00160
CA264_00165: CA264_00165 - macrolide ABC transporter ATP-binding protein, at 41,962 to 42,690
_00165
CA264_00170: CA264_00170 - ATP:cob(I)alamin adenosyltransferase, at 42,690 to 43,244
_00170
CA264_00175: CA264_00175 - branched chain amino acid aminotransferase, at 43,302 to 44,375
_00175
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 41.707 kb on + strand at 41.708 kb on - strand at 41.708 kb on - strand at 41.710 kb on - strand at 41.732 kb on - strand at 41.754 kb on + strand at 41.758 kb on + strand at 41.759 kb on - strand at 41.782 kb on + strand at 41.792 kb on - strand at 41.878 kb on + strand at 41.879 kb on - strand at 41.879 kb on - strand at 41.879 kb on - strand at 41.988 kb on + strand at 42.034 kb on - strand at 42.112 kb on - strand, within CA264_00165 at 42.246 kb on + strand, within CA264_00165 at 42.247 kb on - strand, within CA264_00165 at 42.439 kb on - strand, within CA264_00165 at 42.481 kb on - strand, within CA264_00165 at 42.502 kb on + strand, within CA264_00165 at 42.502 kb on + strand, within CA264_00165 at 42.503 kb on - strand, within CA264_00165 at 42.586 kb on + strand, within CA264_00165 at 42.587 kb on - strand, within CA264_00165 at 42.704 kb on + strand at 42.734 kb on + strand at 42.736 kb on + strand at 42.736 kb on + strand at 42.737 kb on - strand at 42.737 kb on - strand at 42.737 kb on - strand at 42.766 kb on + strand, within CA264_00170 at 42.767 kb on - strand, within CA264_00170 at 42.780 kb on + strand, within CA264_00170 at 42.868 kb on + strand, within CA264_00170 at 42.869 kb on - strand, within CA264_00170 at 42.869 kb on - strand, within CA264_00170 at 42.980 kb on - strand, within CA264_00170 at 42.986 kb on + strand, within CA264_00170 at 42.987 kb on - strand, within CA264_00170 at 43.257 kb on + strand at 43.270 kb on - strand at 43.270 kb on - strand at 43.270 kb on - strand at 43.288 kb on - strand at 43.299 kb on - strand at 43.299 kb on - strand at 43.301 kb on + strand at 43.302 kb on - strand at 43.302 kb on - strand at 43.310 kb on - strand at 43.313 kb on + strand at 43.322 kb on + strand at 43.322 kb on + strand at 43.323 kb on - strand at 43.324 kb on + strand at 43.422 kb on + strand, within CA264_00175 at 43.453 kb on + strand, within CA264_00175 at 43.454 kb on - strand, within CA264_00175 at 43.454 kb on - strand, within CA264_00175 at 43.487 kb on + strand, within CA264_00175 at 43.488 kb on - strand, within CA264_00175 at 43.536 kb on + strand, within CA264_00175 at 43.537 kb on - strand, within CA264_00175 at 43.537 kb on - strand, within CA264_00175 at 43.716 kb on + strand, within CA264_00175 at 43.716 kb on + strand, within CA264_00175 at 43.716 kb on + strand, within CA264_00175 at 43.717 kb on - strand, within CA264_00175 at 43.717 kb on - strand, within CA264_00175 at 43.717 kb on - strand, within CA264_00175 at 43.730 kb on + strand, within CA264_00175 at 43.815 kb on + strand, within CA264_00175 at 43.816 kb on - strand, within CA264_00175 at 43.840 kb on + strand, within CA264_00175 at 43.986 kb on + strand, within CA264_00175 at 44.015 kb on - strand, within CA264_00175 at 44.015 kb on - strand, within CA264_00175 at 44.015 kb on - strand, within CA264_00175 at 44.043 kb on - strand, within CA264_00175 at 44.043 kb on - strand, within CA264_00175 at 44.043 kb on - strand, within CA264_00175 at 44.092 kb on + strand, within CA264_00175 at 44.093 kb on - strand, within CA264_00175 at 44.126 kb on - strand, within CA264_00175 at 44.126 kb on - strand, within CA264_00175 at 44.141 kb on - strand, within CA264_00175 at 44.228 kb on - strand, within CA264_00175 at 44.228 kb on - strand, within CA264_00175 at 44.241 kb on + strand, within CA264_00175 at 44.242 kb on - strand, within CA264_00175
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 41,707 + -0.9 41,708 - -0.7 41,708 - -1.5 41,710 - +0.3 41,732 - +0.2 41,754 + -1.3 41,758 + -1.3 41,759 - -1.9 41,782 + -0.7 41,792 - +1.6 41,878 + -1.0 41,879 - -1.5 41,879 - -2.1 41,879 - -1.0 41,988 + -1.0 42,034 - -3.3 42,112 - CA264_00165 0.21 -3.4 42,246 + CA264_00165 0.39 -2.9 42,247 - CA264_00165 0.39 -0.4 42,439 - CA264_00165 0.65 -0.5 42,481 - CA264_00165 0.71 -1.8 42,502 + CA264_00165 0.74 -2.3 42,502 + CA264_00165 0.74 -1.0 42,503 - CA264_00165 0.74 -3.2 42,586 + CA264_00165 0.86 -1.5 42,587 - CA264_00165 0.86 -0.8 42,704 + +1.5 42,734 + +0.7 42,736 + +0.7 42,736 + -0.2 42,737 - -0.6 42,737 - +0.4 42,737 - -0.1 42,766 + CA264_00170 0.14 +0.8 42,767 - CA264_00170 0.14 +0.1 42,780 + CA264_00170 0.16 +0.5 42,868 + CA264_00170 0.32 +0.6 42,869 - CA264_00170 0.32 +0.6 42,869 - CA264_00170 0.32 +0.6 42,980 - CA264_00170 0.52 -0.1 42,986 + CA264_00170 0.53 -0.2 42,987 - CA264_00170 0.54 +0.0 43,257 + -2.2 43,270 - -0.2 43,270 - -0.3 43,270 - -0.5 43,288 - +0.9 43,299 - -0.9 43,299 - -0.7 43,301 + -0.0 43,302 - -0.6 43,302 - -0.5 43,310 - -2.2 43,313 + -0.5 43,322 + -0.2 43,322 + -0.7 43,323 - +0.0 43,324 + +0.3 43,422 + CA264_00175 0.11 -0.2 43,453 + CA264_00175 0.14 -0.1 43,454 - CA264_00175 0.14 -0.1 43,454 - CA264_00175 0.14 -0.9 43,487 + CA264_00175 0.17 -0.5 43,488 - CA264_00175 0.17 +0.8 43,536 + CA264_00175 0.22 +0.2 43,537 - CA264_00175 0.22 +2.6 43,537 - CA264_00175 0.22 -0.6 43,716 + CA264_00175 0.39 -1.5 43,716 + CA264_00175 0.39 -0.5 43,716 + CA264_00175 0.39 +1.0 43,717 - CA264_00175 0.39 -0.7 43,717 - CA264_00175 0.39 -0.5 43,717 - CA264_00175 0.39 -0.8 43,730 + CA264_00175 0.40 -0.1 43,815 + CA264_00175 0.48 -1.2 43,816 - CA264_00175 0.48 +0.3 43,840 + CA264_00175 0.50 -0.4 43,986 + CA264_00175 0.64 -0.6 44,015 - CA264_00175 0.66 -0.3 44,015 - CA264_00175 0.66 -0.2 44,015 - CA264_00175 0.66 +0.4 44,043 - CA264_00175 0.69 +0.0 44,043 - CA264_00175 0.69 +0.3 44,043 - CA264_00175 0.69 -0.6 44,092 + CA264_00175 0.74 -0.3 44,093 - CA264_00175 0.74 -0.2 44,126 - CA264_00175 0.77 -0.1 44,126 - CA264_00175 0.77 +0.0 44,141 - CA264_00175 0.78 -0.7 44,228 - CA264_00175 0.86 -0.2 44,228 - CA264_00175 0.86 -0.0 44,241 + CA264_00175 0.87 +0.5 44,242 - CA264_00175 0.88 -0.3
Or see this region's nucleotide sequence